Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    29   1.6  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    29   1.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.6  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   3.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.6  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   3.6  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   4.8  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNI---LKLKPRR 264
           N +  + G ES ++ ++V    DSW              I   +    N+   L  KPRR
Sbjct: 428 NIMAQIDGYES-DQILVVGAPRDSWCTGASDSSVGTSLLID-VISTFANMAQDLSWKPRR 485

Query: 265 TIRAILWTAEEPGLIGAEAYL 285
           TI    W A +   IG+  +L
Sbjct: 486 TIVFASWDARQFNAIGSTEFL 506


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 88  AIVIKSFDELEKTDENKIKGKIVVFDPPFVSYGETVVYRSLGASKASRK 136
           ++ + S  E  K+D  K  G +V F  P ++  E   YR +   K+ +K
Sbjct: 246 SLTVNSTIEKHKSDNKKTFGTLVSFVEPTITGSEQSDYRQIKIKKSKKK 294


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNILKLKPRRTIR 267
           N ++  +GK      +++S H DS               ++  + +     K +P R + 
Sbjct: 127 NILVKFEGKSKDLFPILLSAHFDS--VSTGYGATDDGMGVATVMAIARYYAKNQPNRDLI 184

Query: 268 AILWTAEEPGLIGAEAYLTKHI--NETSNIN 296
             +  AEE  L GA+A+ +  +  N T+ +N
Sbjct: 185 ININNAEEDYLFGAKAFASHKLSKNVTAFVN 215


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 89  IVIKSFDELEKTDENKIKGKIVVFDPPFVSYGETVVYRSLGASKASRKGAVATLVRSITP 148
           +++ + D+L  T  +  +  I   +    +    +   +L  + A  K    ++VR I+ 
Sbjct: 28  VIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKTSIVREISS 87

Query: 149 --FSIYSLHTGAQDYENNVTKIPTAAITHEDADLFRRLQNLGEKIVLKIHMSYAMSRKIS 206
             F+   L   +    +N  +   A + +E A++ ++  N+         +   +  KI 
Sbjct: 88  RTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMS--------LMQDICEKIR 139

Query: 207 RNTIIDLKGKESPEKQVI 224
           +  I+DL+  + PEK+ +
Sbjct: 140 KLDIVDLRAPKKPEKEAM 157


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 22  LEKAIDHMVNL-TRQNGLNDVTTE---EVDIPYWQRI--YESANMFEPYLKKISILGLGT 75
           +EK +  ++ + ++ N L +V  +   E D  Y QR+  +E+  +++P        GLG 
Sbjct: 556 IEKTLQKLMPVASKLNPLEEVMYDDPKENDFEYQQRLETFETLRIYKPRFLICGRKGLGQ 615

Query: 76  SVSTPAEGIKAEAIVIKSFD 95
           +   PA   + E + ++SFD
Sbjct: 616 TALGPAILQQYEGVHVQSFD 635


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 62  EPYLKKISILGLGTSVSTPAEGIKAEA--IVIKSFDELEKTDENKIKGKIVVFD 113
           +PY K++ I+G+G    + A+ I      IV  + + LE  +E ++    V FD
Sbjct: 156 DPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVSFD 209


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 251 VPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHINETSNINFIMESDEGTFKPLG 310
           +P+I N+++  P      + W   +  ++  +  L  HI +   +N ++  D   F   G
Sbjct: 164 IPMIKNVIRKYP--DAEWVWWLDHDALIMNRDLNLVDHILKHEKLNSLLLRDTEYFSGFG 221

Query: 311 LDVAG 315
           +D  G
Sbjct: 222 IDSEG 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,139
Number of Sequences: 5004
Number of extensions: 72864
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 8
length of query: 409
length of database: 2,362,478
effective HSP length: 74
effective length of query: 335
effective length of database: 1,992,182
effective search space: 667380970
effective search space used: 667380970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)