Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 44 2e-04
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 44 3e-04
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170... 41 0.002
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 36 0.078
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 31 2.2
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 3.9
04_04_0039 + 22316171-22316273,22317124-22317824,22317924-223180... 29 5.1
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 29 5.1
04_03_0892 + 20596107-20596682,20597219-20597251,20597794-205978... 29 8.9
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 44.4 bits (100), Expect = 2e-04
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNILKLK---PRR 264
N ++GKE P++ VI+ H D+W + + L+ L+ K PRR
Sbjct: 363 NVFAVIEGKEEPDRYVIIGNHRDAWTFGAVDPNSGTAAMLE--IAERLSKLEKKGWRPRR 420
Query: 265 TIRAILWTAEEPGLIGAEAYLTKHINE-TSNINFIMESDEGTFKPLGLDVAGSTNARCII 323
TI W AEE LIG+ ++ +++ S + D F P G + +I
Sbjct: 421 TIIVCSWDAEEFALIGSTEWVEDNMDMLASRAIAYLNVDITVFGPGGFRPRATPQLDQLI 480
Query: 324 AEVLKLFTPIDKMKESEY 341
E K+ D ++ Y
Sbjct: 481 KEASKMVQDPDDPSQTLY 498
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 43.6 bits (98), Expect = 3e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 207 RNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVI-LNILKLKPRRT 265
+N I ++GKE PE+ +I+ H D+W + L +PRRT
Sbjct: 347 QNVISVIEGKEEPERYIILGNHRDAWTFGAVDPNSGTAALLELAQRFSELQKKGWRPRRT 406
Query: 266 IRAILWTAEEPGLIGAEAYLTKH 288
I W AEE GL+G+ ++ ++
Sbjct: 407 IILCNWDAEEYGLVGSTEWVEEN 429
>01_06_0655 -
30916396-30916578,30916689-30916748,30916916-30917032,
30917139-30917246,30917301-30917390,30917731-30917799,
30918086-30918178,30918292-30918384,30918540-30918621,
30919467-30919534,30919662-30920684
Length = 661
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPV-ILNILKLKPRRTI 266
N ++G E P++ VI+ H D+W I + +L +PRRTI
Sbjct: 351 NVFAVIEGAEEPDRYVILGNHRDAWTFGASDPNSGTAAMIELAQRLSVLQKQGWRPRRTI 410
Query: 267 RAILWTAEEPGLIGAEAYLTKH 288
W AEE GL G+ ++ ++
Sbjct: 411 IFCSWDAEEYGLTGSTEWVEEN 432
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 35.5 bits (78), Expect = 0.078
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 195 IHMSYAMSRKIS--RNTIIDLKGKESPEKQVIVSGHIDSWXXXXX--XXXXXXXXXISWF 250
++ +Y RK+ ++ +KG E P++ VI+ H D+W I+
Sbjct: 345 VNFTYQEDRKMGMIQDIFAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARR 404
Query: 251 VPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYL 285
+ ++L PRRTI W AEE G+ +++
Sbjct: 405 LGIMLQ-SGWTPRRTIILCSWDAEEFGMFSKISFI 438
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 311 LDVAGSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASLLNENERYFW-F 369
L +A STN I+A L+L P K +E ++T Q+G ++ + +W
Sbjct: 321 LRLAASTNVTAIVASCLELLPPNFK-SVAEAAKQELTQLHQRGFYCFPFVDSTDPEYWSI 379
Query: 370 HHSE 373
HH+E
Sbjct: 380 HHAE 383
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 55 YESANMFEPYLKKISILGLGTSVSTPAEGIKAEAIVIKSFDE--LE--KTDENKIKGKIV 110
+ESA M L+KIS+L L V E + + +D+ L+ KT E I+ K V
Sbjct: 3014 FESAFMHSHILEKISLLELEGKVRHQCEELAGSSSEEDGYDQKLLQELKTKEKSIRAK-V 3072
Query: 111 VFDPP 115
VF PP
Sbjct: 3073 VFRPP 3077
>04_04_0039 +
22316171-22316273,22317124-22317824,22317924-22318010,
22318361-22318420,22318971-22319912,22320678-22320723,
22320889-22321010
Length = 686
Score = 29.5 bits (63), Expect = 5.1
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 315 GSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASLLNENERYFWFHHSE- 373
GS + C E + LF PI +E YP D + + E+E E
Sbjct: 569 GSMGSNCSDDETVMLFEPIGTGEEESYPAQDRPSPEEMAFLVSLGWKEDEIVPPLKQEEI 628
Query: 374 GDTM--NVQNQEDVVACAAFWAAF 395
D + NV+ Q+ + C A W F
Sbjct: 629 ADCLRHNVRLQQKLEECRAMWGCF 652
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 29.5 bits (63), Expect = 5.1
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 28 HMVNLTRQNGLNDV----TTEEVDIPYWQR-----IYESANMFEPYLKKISILGLGTSVS 78
H+VNL +GL + + Y++R Y +AN+F PY+ K+ I L +
Sbjct: 153 HIVNLVVNDGLQPIQPLINNLRNTVKYFKRSPARSTYPTANVFYPYIVKVKISIL--AAQ 210
Query: 79 TPAEGIKAEAIVIKSFDELEKTDENKI 105
T A+ AEA + L + D N +
Sbjct: 211 TQAQARLAEAAKLGQQTGLYEPDPNDV 237
>04_03_0892 +
20596107-20596682,20597219-20597251,20597794-20597881,
20597966-20598447,20598545-20598811,20598881-20599230,
20599330-20599861
Length = 775
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 335 KMKESEYPGSDMTLFVQKGIPGASLLNENERYFWFHHSE 373
K + S P D + F+ ++L E E W+HH +
Sbjct: 396 KERRSIIPAGDTSQFISSSEADIAILEEPEHLNWYHHGK 434
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,931
Number of Sequences: 37544
Number of extensions: 414372
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 9
length of query: 409
length of database: 14,793,348
effective HSP length: 84
effective length of query: 325
effective length of database: 11,639,652
effective search space: 3782886900
effective search space used: 3782886900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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