Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.) 392 e-109
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15) 50 5e-06
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10) 48 1e-05
SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11) 48 1e-05
SB_33615| Best HMM Match : PA (HMM E-Value=9e-16) 48 2e-05
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 7e-05
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26) 35 0.10
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11) 35 0.10
SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16) 33 0.55
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 31 1.3
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 31 1.7
SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19) 31 1.7
>SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 392 bits (964), Expect = e-109
Identities = 195/410 (47%), Positives = 269/410 (65%), Gaps = 3/410 (0%)
Query: 1 MYEDYSKFIDTFGARLAGSKALEKAIDHMVNLTRQNGLNDVTTEEVDIPYWQRIYESANM 60
+Y + F D FG+R+AGS+ LE AID+M+N +++GL +V EEV +P+W R ESA M
Sbjct: 74 VYNRLADFTDRFGSRIAGSQNLENAIDYMLNALKKDGLENVHGEEVMVPHWVRGGESAEM 133
Query: 61 FEPYLKKISILGLGTSVSTPAEGIKAEAIVIKSFDELEKTDENKIKGKIVVFDPPFVSYG 120
+P K+SILGLG+S TP EGI AE +V+KSF+EL T ++ KGKIVVF+ F+SYG
Sbjct: 134 LQPREHKMSILGLGSSTGTPPEGITAEVLVVKSFEELT-TRADEAKGKIVVFNQDFISYG 192
Query: 121 ETVVYRSLGASKASRKGAVATLVRSITPFSIYSLHTGAQDYENNVTKIPTAAITHEDADL 180
ETV YR A + ++ G +A+L+RS+TPFSI S HTG QDY+ + KIPTA IT EDA++
Sbjct: 193 ETVKYRDFAAQRTAQVGGMASLIRSVTPFSINSPHTGWQDYKKGIPKIPTACITVEDAEM 252
Query: 181 FRRLQNLGEKIVLKIHMSYAMSRKI-SRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXX 239
R+ G+KIV+K+ MS + SRNT+ ++ G + PE+ V+VSGH+DSW
Sbjct: 253 MWRMAQRGDKIVVKLIMSAKSLPPVKSRNTVAEIIGSKYPEQVVLVSGHLDSWDVGEGAM 312
Query: 240 XXXXXXXISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHINETSNINFIM 299
ISW I + L+P+RT+R +LWT EE GLIG Y H SN + +M
Sbjct: 313 DDGGGAFISWQALSIFRQMNLRPKRTLRMVLWTGEEEGLIGGMKYYNDHKVNVSNYDLVM 372
Query: 300 ESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESE-YPGSDMTLFVQKGIPGAS 358
ESD GTFKPLGLD G+ A I+ EVL+L PI+ + + Y D+T +V G+P S
Sbjct: 373 ESDIGTFKPLGLDFKGNAAANEIMKEVLQLLMPINATQLAHGYVDGDITGWVNAGVPAGS 432
Query: 359 LLNENERYFWFHHSEGDTMNVQNQEDVVACAAFWAAFSYVIADLSQDIPR 408
L NENE+YF FHHS+GDTM VQ+ +++ CA WA ++ +A+L + +PR
Sbjct: 433 LKNENEKYFDFHHSDGDTMTVQDPDEMDLCAIVWAVVAFTVANLEEMLPR 482
>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
Length = 802
Score = 49.6 bits (113), Expect = 5e-06
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 188 GEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXI 247
G +++ ++ S N I + G+E P++ VI+ H DSW +
Sbjct: 393 GNNTKVRLEVNTQSELMTSYNVIGTISGREEPDRYVIIGNHRDSW--VTGAGDASSGSAV 450
Query: 248 SWFVPVILNILK---LKPRRTIRAILWTAEEPGLIGAEAYLTKHIN 290
++ + +L L+ +PRRTI+ W AEE GL G+ ++ ++ N
Sbjct: 451 TFEIARVLGRLRKSGWRPRRTIKFCSWGAEEWGLFGSTEWVEQNRN 496
>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
Length = 688
Score = 48.4 bits (110), Expect = 1e-05
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 194 KIHMSYAMSRKISR--NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFV 251
K+H++ R + N I ++G+E P++ VIV H DSW +
Sbjct: 287 KVHLTTKSKRVMHPIFNVIGTIRGREEPDRYVIVGNHRDSWVFGASDPSSGTAIQME-VS 345
Query: 252 PVILNILK--LKPRRTIRAILWTAEEPGLIGAEAYLTKHINETSNINFI-MESDEGTFKP 308
+ +LK +PRRTI W +EE G+ G+ ++ +H + + D G
Sbjct: 346 RGLGELLKRGWRPRRTIILCSWDSEERGVSGSTEWVEEHAQILRRRAVVYLNIDTGVSGN 405
Query: 309 LGLDVAGS-TNARCIIAEVLKLFTPIDKMKESEY---PGSDMTLFVQKGIPGASLLNENE 364
L+V GS + ++A ++ P K S Y D T ++ G+P L
Sbjct: 406 FSLNVDGSPLIEKILVATSKEVQDPTTKHAASMYDVITERDKTK-LRGGVPVCDNLALGS 464
Query: 365 RYFWFHHSEG 374
Y F+H G
Sbjct: 465 DYVAFYHLIG 474
>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
Length = 1098
Score = 48.0 bits (109), Expect = 1e-05
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 191 IVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWF 250
I L +H A+++ RN I +KG E P++ V++ H D W ++
Sbjct: 361 IKLSVHNKLAITK--IRNVIATIKGSEEPDRYVMIGNHRDGW-LFGAADPSSGTATLAEI 417
Query: 251 VPVILNILK--LKPRRTIRAILWTAEEPGLIGAEAYLTKH 288
V+ +++ +P+RTI+ W EE G++G+ + +H
Sbjct: 418 SRVVRELVREGWQPKRTIKLCSWGGEEFGMLGSIEWSEEH 457
>SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)
Length = 629
Score = 47.6 bits (108), Expect = 2e-05
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 186 NLGEKIVLKIHMSYAMSRKISRNTIID----LKGKESPEKQVIVSGHIDSWXXXX--XXX 239
NLG ++ + + + K+ TI + + G+E P++ V++ H DSW
Sbjct: 212 NLGPELTNNMRVKLEVHNKLEIKTIYNVIGTIYGQEEPDRYVLMGNHRDSWVFGAIDAST 271
Query: 240 XXXXXXXISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKH 288
IS +L +PRRTI W AEE GLIG+ ++ +H
Sbjct: 272 GTAVTAEISRGFGKLLK-KGWRPRRTIMMCSWDAEEYGLIGSHEWVEEH 319
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 45.6 bits (103), Expect = 7e-05
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 193 LKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWF-- 250
L +H+ +S + + I + G+E P++ VI+ H D+W +
Sbjct: 263 LNMHIITELSINTTYDVIATITGREEPDRLVILGNHRDAWVFGAVDPVTATAATMETARG 322
Query: 251 VPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHI 289
+ +LN +PRR+I W AEE G+IG+ ++ +++
Sbjct: 323 LSKLLN-ASWRPRRSIMLCSWGAEEHGIIGSTEWVEENL 360
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 44.4 bits (100), Expect = 2e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNILK--LKPRRT 265
N I + G P++ V++ H D++ ++ V+ N+LK +PRRT
Sbjct: 470 NVIGTITGSNEPDRYVLIGNHRDAFLYGAVDPSSGTAT-LAEMARVMGNLLKSGYRPRRT 528
Query: 266 IRAILWTAEEPGLIGAEAYLTKH 288
I+ W AEE GLIG+ ++ +H
Sbjct: 529 IKFCSWGAEEFGLIGSVEWVEEH 551
>SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXX--ISWFVPVILNILKLKPRRT 265
N I + G+E P++ V+ H D+W +S + +L K +PRRT
Sbjct: 692 NVIGTITGQEEPDRIVLYGNHRDAWVFGGVDSSSGSAVMMELSRGLGYLLKNKKWRPRRT 751
Query: 266 IRAILWTAEEPGLIGAEAYLTKH 288
I W EE GLIG+ ++ ++
Sbjct: 752 IMLCSWAVEEYGLIGSAEWVNEN 774
>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 41.9 bits (94), Expect = 0.001
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNILK--LKPRRT 265
N I + G+E P++ VI+ H D+W + + N+LK +PRRT
Sbjct: 246 NVIGTIAGREEPDRYVILGNHRDAWVFGASDPSSGTAILME-LSRGLGNLLKKGWRPRRT 304
Query: 266 IRAILWTAEEPGLIGAEAYLTKHINET-SNINFIMESDEGTFKPLGLDVAGSTNARCIIA 324
I W AEE + G+ ++ +H S + D G L++ GS ++
Sbjct: 305 IILCSWDAEEQFVSGSTEWVEEHAQVLGSRAVTYLNIDVGVGGNFTLNMDGSALIEKLLV 364
Query: 325 EVLK 328
E K
Sbjct: 365 ETAK 368
>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 41.1 bits (92), Expect = 0.002
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 193 LKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSW--XXXXXXXXXXXXXXISWF 250
+K+ + + K N I + G+E P++ V++ H DSW IS
Sbjct: 349 VKLEVHNELEIKTIYNVIGTIYGQEEPDRYVLMGNHRDSWVFGAVDASTGTAVTAEISRG 408
Query: 251 VPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKH 288
++ +PRRTI W EE LIG+ ++ +H
Sbjct: 409 FGELMK-KGWRPRRTIMMCSWGGEEFSLIGSREWVEQH 445
>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
Length = 520
Score = 35.1 bits (77), Expect = 0.10
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 208 NTIIDLKGKESPEKQVIVSGHIDSWXXXXX--XXXXXXXXXISWFVPVILNILKLKPRRT 265
N I ++G P++ V++ H D+W ++ ++ +PRRT
Sbjct: 139 NVIGTIRGAVEPDRIVMIGNHRDAWVFGGVDPSSGSAVMMEVARGFGKLMKETGWRPRRT 198
Query: 266 IRAILWTAEEPGLIGAEAYLTKH 288
I W EE GLIG+ ++ ++
Sbjct: 199 IMFCSWGVEEYGLIGSVEWVEEN 221
>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
Length = 531
Score = 35.1 bits (77), Expect = 0.10
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 202 SRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXXXXXXXXXXISWFVPVILNILKL- 260
S K + + D ++ ++ VIV H D+W + V+ +LK
Sbjct: 313 SAKRANEPLTDQINLDAVDQLVIVGCHRDAWVFGGTDGSSGTAALME-VARVLGELLKKG 371
Query: 261 -KPRRTIRAILWTAEEPGLIGAEAYLTKH 288
+PRRTI W EE G IG+ + +H
Sbjct: 372 WRPRRTIVMASWGGEEMGTIGSTEWTEEH 400
>SB_10786| Best HMM Match : PA (HMM E-Value=2.4e-16)
Length = 270
Score = 32.7 bits (71), Expect = 0.55
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 261 KPRRTIRAILWTAEEPGLIGAEAYLTKHIN 290
+PRRTI + W AEEPG++G+ + + N
Sbjct: 201 RPRRTIVFLSWGAEEPGVLGSTEWAEEFSN 230
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 85 KAEAIVIKSFDELEKTDENKIK--GKIVVFDPPFVSYGETVVYRSLGASKASRKGAVATL 142
K +I K+ ++ +KTD N+ + G + DP + Y + RS+ S G +
Sbjct: 59 KVPSIKPKTSEDQKKTDSNQYRMGGALTTDDPGKLDYRK----RSIYLSNVETYGCHGSA 114
Query: 143 VRSITPFSIYSLHTGAQDYENNVTK 167
+RS+ P + S+ D +N TK
Sbjct: 115 LRSVKPRANVSIADNIADASDNKTK 139
>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 893
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 30 VNLTRQNGLNDVTTEEVDIPYWQRIYESANMFEPYLKKISILGLGTSVSTPAEGI---KA 86
VN R GL + + + IP W++ +S +M L+K+S+L L V P + +
Sbjct: 818 VNSNRMPGLRESSLDG-KIPGWEKPVDSNSMKLNELEKLSLLDLNDEVQDPTKPLLQPAG 876
Query: 87 EAIVIKSFDELEK 99
A+ + ELE+
Sbjct: 877 SAVKTPTIQELER 889
>SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19)
Length = 380
Score = 31.1 bits (67), Expect = 1.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 193 LKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSW 232
+++ + + ++ N I + G E P++ VI+ H D+W
Sbjct: 313 VRVFVDNKLEKRSVHNVIATINGDEEPDRYVILGSHRDAW 352
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,486
Number of Sequences: 59808
Number of extensions: 474760
Number of successful extensions: 965
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 17
length of query: 409
length of database: 16,821,457
effective HSP length: 84
effective length of query: 325
effective length of database: 11,797,585
effective search space: 3834215125
effective search space used: 3834215125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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