Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
         (409 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   6.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   6.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   6.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.2  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 4   DYSKFIDTFGARLAGSKALEKAIDHMV--NLTRQNGLNDVTTEEVDIPYWQRIYESANMF 61
           +Y K+ +T   R    K  EK+ +H +  +L+     N+   +++    ++++Y + N  
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114

Query: 62  E 62
           E
Sbjct: 115 E 115


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 4   DYSKFIDTFGARLAGSKALEKAIDHMV--NLTRQNGLNDVTTEEVDIPYWQRIYESANMF 61
           +Y K+ +T   R    K  EK+ +H +  +L+     N+   +++    ++++Y + N  
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYI 114

Query: 62  E 62
           E
Sbjct: 115 E 115


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 4   DYSKFIDTFGARLAGSKALEKAIDHMV--NLTRQNGLNDVTTEEVDIPYWQRIYESANMF 61
           +Y K+ +T   R    K  EK+ +H +  +L+     N+   +++    ++++Y + N  
Sbjct: 55  EYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114

Query: 62  E 62
           E
Sbjct: 115 E 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 215 GKESPEKQVIVSGHIDS 231
           GKE     ++V GH+DS
Sbjct: 2   GKEKIHINIVVIGHVDS 18


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 215 GKESPEKQVIVSGHIDS 231
           GKE     ++V GH+DS
Sbjct: 2   GKEKIHINIVVIGHVDS 18


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,692
Number of Sequences: 429
Number of extensions: 4553
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 409
length of database: 140,377
effective HSP length: 59
effective length of query: 350
effective length of database: 115,066
effective search space: 40273100
effective search space used: 40273100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)