GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
         (409 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061090-1|AAL28638.1|   90|Drosophila melanogaster LD07775p pro...    30   5.0  
AF218862-1|AAF31702.1|   90|Drosophila melanogaster Smt3 protein.      30   5.0  
AF053083-1|AAD19219.1|   90|Drosophila melanogaster ubiquitin-li...    30   5.0  
AE014134-1209|AAF52470.1|   90|Drosophila melanogaster CG4494-PA...    30   5.0  

>AY061090-1|AAL28638.1|   90|Drosophila melanogaster LD07775p
           protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 300 ESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASL 359
           E   G  + + L V G  NA  ++   +K  TP+ K+  +    + +++ V +       
Sbjct: 4   EKKGGETEHINLKVLGQDNA--VVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQP 61

Query: 360 LNENERYFWFHHSEGDTMNVQNQE 383
           +NEN+        EGDT+ V  Q+
Sbjct: 62  INENDTPTSLEMEEGDTIEVYQQQ 85


>AF218862-1|AAF31702.1|   90|Drosophila melanogaster Smt3 protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 300 ESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASL 359
           E   G  + + L V G  NA  ++   +K  TP+ K+  +    + +++ V +       
Sbjct: 4   EKKGGETEHINLKVLGQDNA--VVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQP 61

Query: 360 LNENERYFWFHHSEGDTMNVQNQE 383
           +NEN+        EGDT+ V  Q+
Sbjct: 62  INENDTPTSLEMEEGDTIEVYQQQ 85


>AF053083-1|AAD19219.1|   90|Drosophila melanogaster ubiquitin-like
           protein SMT3 protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 300 ESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASL 359
           E   G  + + L V G  NA  ++   +K  TP+ K+  +    + +++ V +       
Sbjct: 4   EKKGGETEHINLKVLGQDNA--VVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQP 61

Query: 360 LNENERYFWFHHSEGDTMNVQNQE 383
           +NEN+        EGDT+ V  Q+
Sbjct: 62  INENDTPTSLEMEEGDTIEVYQQQ 85


>AE014134-1209|AAF52470.1|   90|Drosophila melanogaster CG4494-PA
           protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 300 ESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESEYPGSDMTLFVQKGIPGASL 359
           E   G  + + L V G  NA  ++   +K  TP+ K+  +    + +++ V +       
Sbjct: 4   EKKGGETEHINLKVLGQDNA--VVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQP 61

Query: 360 LNENERYFWFHHSEGDTMNVQNQE 383
           +NEN+        EGDT+ V  Q+
Sbjct: 62  INENDTPTSLEMEEGDTIEVYQQQ 85


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,162,742
Number of Sequences: 52641
Number of extensions: 705758
Number of successful extensions: 1582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1582
Number of HSP's gapped (non-prelim): 4
length of query: 409
length of database: 24,830,863
effective HSP length: 87
effective length of query: 322
effective length of database: 20,251,096
effective search space: 6520852912
effective search space used: 6520852912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)