Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001275-TA|BGIBMGA001275-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR007484|Peptidase M28
(409 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 52 6e-07
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 52 6e-07
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z78417-11|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 42 0.001
Z78417-10|CAI70407.1| 700|Caenorhabditis elegans Hypothetical p... 35 0.12
Z67995-5|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z48584-6|CAA88476.1| 280|Caenorhabditis elegans Hypothetical pr... 29 7.9
>U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical
protein R57.1b protein.
Length = 576
Score = 52.4 bits (120), Expect = 6e-07
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 188 GEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXX--XXXXXXX 245
GEK+ + +H S +++I RN I ++G E P+ +++ H D+W
Sbjct: 330 GEKLSINVH-SELRTKRI-RNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLA 387
Query: 246 XISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHIN 290
++ + +N KP RTI W AEE GLIG+ ++ + +N
Sbjct: 388 EVARAMMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 52.4 bits (120), Expect = 6e-07
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 188 GEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXX--XXXXXXX 245
GEK+ + +H S +++I RN I ++G E P+ +++ H D+W
Sbjct: 330 GEKLSINVH-SELRTKRI-RNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLA 387
Query: 246 XISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHIN 290
++ + +N KP RTI W AEE GLIG+ ++ + +N
Sbjct: 388 EVARAMMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 52.4 bits (120), Expect = 6e-07
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 188 GEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXXX--XXXXXXX 245
GEK+ + +H S +++I RN I ++G E P+ +++ H D+W
Sbjct: 349 GEKLSINVH-SELRTKRI-RNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLA 406
Query: 246 XISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKHIN 290
++ + +N KP RTI W AEE GLIG+ ++ + +N
Sbjct: 407 EVARAMMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 451
>Z78417-11|CAB01688.2| 745|Caenorhabditis elegans Hypothetical
protein C35C5.2 protein.
Length = 745
Score = 41.5 bits (93), Expect = 0.001
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 189 EKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXXX--XXXXXXXXX 246
+K+ + +H RKI +N + +KG + P+K V+VS H D+W
Sbjct: 324 QKLRVTVHAENE-ERKI-QNIMGYIKGSQEPDKFVLVSNHYDAWTYGAVDPNSGTSTLLE 381
Query: 247 ISWFVPVILNILKLKPRRTIRAILWTAEEPGLIGAEAYLTKH 288
+S + N P R+I W AEE GLIG+ + ++
Sbjct: 382 VSRALKQYQNQTGWIPARSILFAHWDAEEYGLIGSTEFAEEY 423
>Z78417-10|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 34.7 bits (76), Expect = 0.12
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 189 EKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHIDSWXXXX------------ 236
+K+ + +H RKI +N + +KG + P+K V+V H D+W
Sbjct: 318 QKLRVTVHAKNE-ERKI-QNVLGYIKGSQEPDKFVLVGNHYDAWTYGAVDPNSVTSTLLE 375
Query: 237 XXXXXXXXXXISWFVPVILNILKLKPRRTIRAIL---WTAEEPGLIGAEAYLTKH 288
++ + PV ++ LK R+IL W AEE GLIG+ + +H
Sbjct: 376 VTRALKAYQNLTGWRPVTFTLV-LKMGFLTRSILFAHWDAEEYGLIGSTEFAEEH 429
>Z67995-5|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 181 FRRLQNLGEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHID 230
F ++ LGE + YA+ R++SR I+ L G +S E++ + I+
Sbjct: 1154 FEKIYPLGENF--RWVEEYALERELSRQPILRLNGDDSEEEEEVTRRRIN 1201
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 181 FRRLQNLGEKIVLKIHMSYAMSRKISRNTIIDLKGKESPEKQVIVSGHID 230
F ++ LGE + YA+ R++SR I+ L G +S E++ + I+
Sbjct: 1154 FEKIYPLGENF--RWVEEYALERELSRQPILRLNGDDSEEEEEVTRRRIN 1201
>Z48584-6|CAA88476.1| 280|Caenorhabditis elegans Hypothetical
protein ZK1321.3 protein.
Length = 280
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 284 YLTKHINETSNINFIMESDEGTFKPLGLDVAGSTNARCIIAEVLKLFTPIDKMKESEYPG 343
Y T H+ SN+ I+ + +G ++ G+ R ++A++L I + +
Sbjct: 142 YSTAHLENASNLECILHYKQTAGIVIGFEIVGAFVVRIVVAQLLARPALIKLIPFAISAY 201
Query: 344 SDMTLFVQKGIPGASLLNENERYF 367
+ L+V G+PG + + R +
Sbjct: 202 LSLALYV-VGVPGLNPIVATARLY 224
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,410,235
Number of Sequences: 27539
Number of extensions: 374977
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 11
length of query: 409
length of database: 12,573,161
effective HSP length: 83
effective length of query: 326
effective length of database: 10,287,424
effective search space: 3353700224
effective search space used: 3353700224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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