Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001274-TA|BGIBMGA001274-PA|IPR003137|Protease-associated
PA, IPR007484|Peptidase M28
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    32   0.20 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    31   0.35 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    30   0.80 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    29   1.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   1.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    29   1.4  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    27   4.3  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   5.7  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   9.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   9.9  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 252 NIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISW 311
           NI      + TL      N ++  +G       +++S H DS   G GA DDG G+    
Sbjct: 109 NITFESTDNDTLTYFEGDNILVKFEGKSKDLFPILLSAHFDSVSTGYGATDDGMGVATVM 168

Query: 312 AAPVILKRLNLIPKRTVRSIFWTAEELGLVGAYAY 346
           A      +    P R +      AEE  L GA A+
Sbjct: 169 AIARYYAKNQ--PNRDLIININNAEEDYLFGAKAF 201


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 26  DKCHN---LLGDELIAEILSYEKVKDEILNYVLQ-----GDFKGQTY--DQLAKFVDKFG 75
           + CH+   L+ +EL+  IL     +D+  NYV+Q     G    + Y  D +   +    
Sbjct: 564 EHCHSERKLIIEELLPHILKL--TQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLS 621

Query: 76  ARPSGSEVLERSIDYMIELTREEDINDIVTEELE 109
                S V+ER I Y+ ++ R   +N I++E+ E
Sbjct: 622 CHKFASNVVERCISYISDVDRRRILNKIISEKAE 655


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 39  EILSYEKVKDEILNYVLQGDFKGQTYDQLAKFVDKFGARPSGSEVLERSIDYMIELTREE 98
           E + Y +   EILNYVL  +    T ++  +++   G + +  + +  S    + L + E
Sbjct: 443 ETIGYARKSSEILNYVLSTEQAFYTVNEAYQWL---GIKSNTEDAMVAS----VALVKFE 495

Query: 99  DINDIVTEELEVPHWVRGEEKITMLEPRVKDISLLGLGRSASTPPEGITA-EVIVFENYD 157
           D +D   + +E   W+  E   ++L        L   GR ++  P+ +   E + +    
Sbjct: 496 DDSD---KAIEAVKWIAEERNSSILYD-----FLASQGRPSNKKPKEVPMDEDLAYNTLG 547

Query: 158 QLDKALDEDV 167
             D+AL +DV
Sbjct: 548 VQDRALSDDV 557


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 282 EKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPV--ILKRLNLIPKRTVRSIFWTAEELG 339
           +++++V    DSW  G      G  L I   +    + + L+  P+RT+    W A +  
Sbjct: 439 DQILVVGAPRDSWCTGASDSSVGTSLLIDVISTFANMAQDLSWKPRRTIVFASWDARQFN 498

Query: 340 LVGA-----YAYEEAHRNESHNINFIMESDEGTFAPLGLIVAGTDKARCIVAEVLKLFES 394
            +G+     Y  E         IN  +     TF      V G  K      +V    + 
Sbjct: 499 AIGSTEFLEYWKESLEAKAVAYINVDVAVSGDTFT--ARTVPGLKKVIQRAFDVANEEDE 556

Query: 395 INASTLIEDD-SPGSDI-SVIIKTGIPGASLHNENEK 429
           + A+ +I DD    SD+ S +   GIP  +L  E  +
Sbjct: 557 MKAANIITDDFDYTSDLTSFLTFAGIPVVNLAFERNE 593


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 99   DINDIVTEELEVPHWVRGEEKITMLEPRVKDISLLGLGR 137
            DI DI+TEE  V   V GE+ +  L P  ++I +  L +
Sbjct: 3018 DITDIITEEFAVEKDVFGEKTVVDLIPNGRNIPVTELNK 3056


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 204 LVRSIAPFSINSPHTGSQTYGDEANKIPTAAI 235
           L  ++ P S + PH+G+  + D+  + PT+ I
Sbjct: 622 LQNALVPLSPSQPHSGNNIFADQVRQSPTSMI 653


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 266 KVSRNTIIDLKGSVHPEKLVIVSGH-IDSWDVGQGAMDDGGGLFISWAAPVILKRLNL-- 322
           K+    + D      P   ++  G  I  WDVG   M +GG   I+  AP+     ++  
Sbjct: 285 KLENGKVFDKNTKGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG 344

Query: 323 IPKRT 327
           IPK +
Sbjct: 345 IPKNS 349


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 129 DISLLGLGRSASTPPEGITAEVIVFENYDQLDKALDEDVRGKIVLYDPIFTTYSETNQY 187
           D++L+GL +  +    G++A VI +     +DKA    ++G I +++  F    +T+ Y
Sbjct: 134 DVALMGLDQILNLVSFGLSAYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPRKTHVY 192


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 107 ELEVPHWVRGEEKITMLEP-RVKDISLLGLGRSASTPPEGI 146
           ++E P  +RG   + + +P  ++ ISL   GRS +  PEGI
Sbjct: 169 QIENPALLRGALVLRVAKPANIRGISLSFTGRSRTEWPEGI 209


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 30  NLLGDELIAEILSYEKVKDEILN-YVLQGDFKGQTYDQLAKFVDKFGARPSGSEVLERSI 88
           N L   ++ E L+ +     ILN ++   DFKG+  D+  + + +    P  S+++ER +
Sbjct: 593 NRLSKRVLGEFLT-KGSNSHILNAFISAFDFKGKRIDEALRLLLQSFRLPGESQLIERVL 651

Query: 89  D 89
           +
Sbjct: 652 E 652


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,469
Number of Sequences: 5004
Number of extensions: 88947
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 10
length of query: 472
length of database: 2,362,478
effective HSP length: 75
effective length of query: 397
effective length of database: 1,987,178
effective search space: 788909666
effective search space used: 788909666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)