Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001274-TA|BGIBMGA001274-PA|IPR003137|Protease-associated
PA, IPR007484|Peptidase M28
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170... 51 2e-06
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 50 3e-06
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 46 7e-05
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 40 0.006
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 37 0.030
03_06_0291 + 32882831-32882998,32883238-32883361,32884528-328845... 31 2.0
01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738... 31 2.0
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288... 30 4.6
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 29 6.1
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 8.0
>01_06_0655 -
30916396-30916578,30916689-30916748,30916916-30917032,
30917139-30917246,30917301-30917390,30917731-30917799,
30918086-30918178,30918292-30918384,30918540-30918621,
30919467-30919534,30919662-30920684
Length = 661
Score = 51.2 bits (117), Expect = 2e-06
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 254 VLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAA 313
+LN+ + N ++G+ P++ VI+ H D+W G + G I A
Sbjct: 335 ILNLTYTGNDTMATIENVFAVIEGAEEPDRYVILGNHRDAWTFGASDPNSGTAAMIELAQ 394
Query: 314 PV-ILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHR 351
+ +L++ P+RT+ W AEE GL G+ + E +R
Sbjct: 395 RLSVLQKQGWRPRRTIIFCSWDAEEYGLTGSTEWVEENR 433
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 50.4 bits (115), Expect = 3e-06
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Query: 254 VLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAA 313
VLN+ +N I ++G PE+ +I+ H D+W G + G + A
Sbjct: 332 VLNLTYIGNETMATIQNVISVIEGKEEPERYIILGNHRDAWTFGAVDPNSGTAALLELAQ 391
Query: 314 PVI-LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRNESHNINFIMESDEGTFAPLG 372
L++ P+RT+ W AEE GLVG+ + E +R + + + G
Sbjct: 392 RFSELQKKGWRPRRTIILCNWDAEEYGLVGSTEWVEENRAMLTSRTVAYLNVDSAVYGAG 451
Query: 373 LIVAGTDKARCIVAEVLKLFES-INASTLIEDDSPGSDISVIIKTG 417
+ T + ++ E K ++ N + + D SD S +IK G
Sbjct: 452 FYASATPQLDELLKEASKQVQNPDNETQSLYDLWMASDSSSMIKIG 497
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 46.0 bits (104), Expect = 7e-05
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 246 MYDRGEN-IVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDG 304
MY G VLN+ N ++G P++ VI+ H D+W G + G
Sbjct: 338 MYRLGPGPAVLNLTYIGNDTLATIENVFAVIEGKEEPDRYVIIGNHRDAWTFGAVDPNSG 397
Query: 305 GGLFISWAAPVI-LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN--ESHNINFIM 361
+ A + L++ P+RT+ W AEE L+G+ + E + + S I + +
Sbjct: 398 TAAMLEIAERLSKLEKKGWRPRRTIIVCSWDAEEFALIGSTEWVEDNMDMLASRAIAY-L 456
Query: 362 ESDEGTFAPLGLIVAGTDKARCIVAEVLKLFE 393
D F P G T + ++ E K+ +
Sbjct: 457 NVDITVFGPGGFRPRATPQLDQLIKEASKMVQ 488
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 39.5 bits (88), Expect = 0.006
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 275 LKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPV-ILKRLNLIPKRTVRSIFW 333
+KG P++ VI+ H D+W G + G + A + I+ + P+RT+ W
Sbjct: 365 IKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIILCSW 424
Query: 334 TAEELGLVGAYAY 346
AEE G+ ++
Sbjct: 425 DAEEFGMFSKISF 437
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 37.1 bits (82), Expect = 0.030
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 19 KQLPKHEDKCHNLLGDELIAEILSYEKVKDEILNYV-LQGDFKGQTYDQLA----KFVDK 73
K+ K +++ H D + E ++ K D + Y+ + D K QL K++ K
Sbjct: 904 KEFHKRKERIHREKLDRIQREKINLLKNND-VEGYLRMVQDAKSDRVKQLLRETEKYLQK 962
Query: 74 FGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEKITMLEPRVKDI 130
GA+ GS+ ++ + Y + T NDI E + H++ EK L VK++
Sbjct: 963 LGAKLQGSKSMDGRVSYASDSTA----NDIEDESYQPQHYLESNEKYYQLAHSVKEV 1015
>03_06_0291 +
32882831-32882998,32883238-32883361,32884528-32884576,
32884672-32884732,32884871-32884917,32885005-32885082,
32885462-32885510
Length = 191
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 392 FESINASTL-IEDDSPGSDISVIIKTGIPGASLHNENEK 429
F+++ + T+ IED+ GSD+S I+K + G ++ N K
Sbjct: 145 FQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMK 183
>01_06_0650 +
30872350-30872736,30873388-30873639,30873723-30873818,
30874005-30874173,30874452-30874552,30874910-30875002,
30876018-30876089,30876509-30876628,30876709-30876759,
30877621-30877809,30878099-30878266
Length = 565
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 374 IVAGTDKARCIVAEVLKLFESINASTLIEDDSPGSDISVIIKTGIPGASLHNEN 427
IV T KAR V + L + + + ++ + SPG + ++ G+ G ++ N
Sbjct: 329 IVIATGKARPAVIDALNMVDLSGRTGIVSESSPGIFLQGLLVYGLQGREIYKRN 382
>09_06_0064 +
20627265-20627538,20628062-20628274,20628772-20628827,
20629417-20629533,20629701-20629820,20629910-20630004,
20630092-20630185,20630406-20630537,20631190-20631302,
20631423-20631657,20631950-20632028,20632029-20632161,
20632780-20632821,20632902-20632950,20633443-20633525,
20633686-20633802,20633893-20633956,20634334-20634486,
20635043-20635126,20635207-20635401,20635507-20635578,
20635599-20635610
Length = 843
Score = 29.9 bits (64), Expect = 4.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 35 ELIAEILSYEKVKD-EILNYVLQGDFKGQTYDQLAKFVDKFGAR------PSGSEVLERS 87
+L+ E+ S ++ D ++ + D KGQ Y + FVD GA P E+L
Sbjct: 662 DLLMELDSMNEIDDFDMFKKRMLADKKGQPYKRALLFVDNSGADVVLGMIPLARELLRNG 721
Query: 88 IDYMIELTREEDINDIVTEEL 108
+ ++ +ND+ EL
Sbjct: 722 TEVVLVANSLPALNDVTANEL 742
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 110 VPHWVRGEEKITMLEPRVKDISLLGLGRSASTP 142
VP W+ +K+TMLE RVK + G+ ++ P
Sbjct: 600 VPEWMEQCDKLTMLEIRVKQLQSTGVHVLSNLP 632
>04_04_0529 -
25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 29.1 bits (62), Expect = 8.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 282 EKLVIVSGHIDSWDVGQGAMDDGG--GLFISWAAPVILKRLNLIPKRTVRSIFWTAEELG 339
+ L++VS HID+ +GA D G+ + A V K V +F T EE G
Sbjct: 423 DNLILVSSHIDTVSTTEGAGDCSSCVGVMLELARGVAQWAHGF--KSGVLFLFNTGEEEG 480
Query: 340 LVGAYAY 346
L GA+++
Sbjct: 481 LDGAHSF 487
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,006
Number of Sequences: 37544
Number of extensions: 559432
Number of successful extensions: 1256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 12
length of query: 472
length of database: 14,793,348
effective HSP length: 85
effective length of query: 387
effective length of database: 11,602,108
effective search space: 4490015796
effective search space used: 4490015796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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