Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001274-TA|BGIBMGA001274-PA|IPR003137|Protease-associated
PA, IPR007484|Peptidase M28
(472 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.) 431 e-121
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15) 59 7e-09
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26) 54 2e-07
SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11) 54 2e-07
SB_33615| Best HMM Match : PA (HMM E-Value=9e-16) 52 1e-06
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 4e-05
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 7e-05
SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-05
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10) 44 2e-04
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-04
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.006
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11) 38 0.017
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.87
SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 32 0.87
SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19) 29 6.1
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22) 29 6.1
>SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 431 bits (1062), Expect = e-121
Identities = 213/461 (46%), Positives = 300/461 (65%), Gaps = 6/461 (1%)
Query: 16 CLAKQLP---KHEDKCHNLLGDELIAEILSYEKVKDEILNYVLQGDFKGQTYDQLAKFVD 72
CL K L K + H + + + EI ++ + ++++ +VL G K Q Y++LA F D
Sbjct: 24 CLGKPLDRDGKTRNDIHFEIPESIRKEIQDHKSIANDVITFVLNGPAKHQVYNRLADFTD 83
Query: 73 KFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEKITMLEPRVKDISL 132
+FG+R +GS+ LE +IDYM+ +++ + ++ EE+ VPHWVRG E ML+PR +S+
Sbjct: 84 RFGSRIAGSQNLENAIDYMLNALKKDGLENVHGEEVMVPHWVRGGESAEMLQPREHKMSI 143
Query: 133 LGLGRSASTPPEGITAEVIVFENYDQLDKALDEDVRGKIVLYDPIFTTYSETNQYRTQXX 192
LGLG S TPPEGITAEV+V +++++L DE +GKIV+++ F +Y ET +YR
Sbjct: 144 LGLGSSTGTPPEGITAEVLVVKSFEELTTRADE-AKGKIVVFNQDFISYGETVKYRDFAA 202
Query: 193 XXXXXXXXXXSLVRSIAPFSINSPHTGSQTYGDEANKIPTAAITLEDADLIRRMYDRGEN 252
SL+RS+ PFSINSPHTG Q Y KIPTA IT+EDA+++ RM RG+
Sbjct: 203 QRTAQVGGMASLIRSVTPFSINSPHTGWQDYKKGIPKIPTACITVEDAEMMWRMAQRGDK 262
Query: 253 IVLNIKMSS-TLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISW 311
IV+ + MS+ +L SRNT+ ++ GS +PE++V+VSGH+DSWDVG+GAMDDGGG FISW
Sbjct: 263 IVVKLIMSAKSLPPVKSRNTVAEIIGSKYPEQVVLVSGHLDSWDVGEGAMDDGGGAFISW 322
Query: 312 AAPVILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRNESHNINFIMESDEGTFAPL 371
A I +++NL PKRT+R + WT EE GL+G Y H+ N + +MESD GTF PL
Sbjct: 323 QALSIFRQMNLRPKRTLRMVLWTGEEEGLIGGMKYYNDHKVNVSNYDLVMESDIGTFKPL 382
Query: 372 GLIVAGTDKARCIVAEVLKLFESINASTLIEDDSPGSDISVIIKTGIPGASLHNENEKYF 431
GL G A I+ EVL+L INA+ L G DI+ + G+P SL NENEKYF
Sbjct: 383 GLDFKGNAAANEIMKEVLQLLMPINATQLAHGYVDG-DITGWVNAGVPAGSLKNENEKYF 441
Query: 432 WFHHTEGDTMNVESPEELDLGAAFWTAVAYIIADISVDIPR 472
FHH++GDTM V+ P+E+DL A W VA+ +A++ +PR
Sbjct: 442 DFHHSDGDTMTVQDPDEMDLCAIVWAVVAFTVANLEEMLPR 482
>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
Length = 802
Score = 59.3 bits (137), Expect = 7e-09
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 250 GENIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFI 309
G N + +++++ + S N I + G P++ VI+ H DSW G G G +
Sbjct: 393 GNNTKVRLEVNTQSELMTSYNVIGTISGREEPDRYVIIGNHRDSWVTGAGDASSGSAVTF 452
Query: 310 SWAAPV-ILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352
A + L++ P+RT++ W AEE GL G+ + E +RN
Sbjct: 453 EIARVLGRLRKSGWRPRRTIKFCSWGAEEWGLFGSTEWVEQNRN 496
>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
Length = 520
Score = 54.4 bits (125), Expect = 2e-07
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 249 RGENIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLF 308
R N+ + +++++ T+ + N I ++G+V P+++V++ H D+W G G +
Sbjct: 118 RDTNLRVRLEVNNEFVTRSAYNVIGTIRGAVEPDRIVMIGNHRDAWVFGGVDPSSGSAVM 177
Query: 309 ISWAAPV--ILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHR 351
+ A ++K P+RT+ W EE GL+G+ + E ++
Sbjct: 178 MEVARGFGKLMKETGWRPRRTIMFCSWGVEEYGLIGSVEWVEENQ 222
>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
Length = 1098
Score = 54.4 bits (125), Expect = 2e-07
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 252 NIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISW 311
N + + + + L RN I +KGS P++ V++ H D W G G
Sbjct: 358 NFTIKLSVHNKLAITKIRNVIATIKGSEEPDRYVMIGNHRDGWLFGAADPSSGTATLAEI 417
Query: 312 AAPV-ILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAH 350
+ V L R PKRT++ W EE G++G+ + E H
Sbjct: 418 SRVVRELVREGWQPKRTIKLCSWGGEEFGMLGSIEWSEEH 457
>SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)
Length = 629
Score = 52.0 bits (119), Expect = 1e-06
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 222 TYGDEA---NKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRNTIIDLKGS 278
+YG+ A +++ A+ E + Y+ G + N+++ + K+ TI ++ G+
Sbjct: 183 SYGEAAQILSRMGGLAVPKEWRGSLNISYNLGPELTNNMRVKLEVHNKLEIKTIYNVIGT 242
Query: 279 VH----PEKLVIVSGHIDSWDVGQGAMDDGGGLF--ISWAAPVILKRLNLIPKRTVRSIF 332
++ P++ V++ H DSW G G + IS +LK+ P+RT+
Sbjct: 243 IYGQEEPDRYVLMGNHRDSWVFGAIDASTGTAVTAEISRGFGKLLKK-GWRPRRTIMMCS 301
Query: 333 WTAEELGLVGAYAYEEAH 350
W AEE GL+G++ + E H
Sbjct: 302 WDAEEYGLIGSHEWVEEH 319
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 46.8 bits (106), Expect = 4e-05
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 249 RGENIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLF 308
R N + + +++ ++ + N I + GS P++ V++ H D++ G A+D G
Sbjct: 449 RVSNTTVRLTINNQVNVQPIYNVIGTITGSNEPDRYVLIGNHRDAFLYG--AVDPSSGTA 506
Query: 309 -ISWAAPVI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAH 350
++ A V+ L + P+RT++ W AEE GL+G+ + E H
Sbjct: 507 TLAEMARVMGNLLKSGYRPRRTIKFCSWGAEEFGLIGSVEWVEEH 551
>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 46.0 bits (104), Expect = 7e-05
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 222 TYGDEAN---KIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRNTIIDLKGS 278
+YGD + K+ +A+ E + Y+ G + N+++ + ++ TI ++ G+
Sbjct: 309 SYGDAVHFLSKMAGSAVPKEWRGSLDISYNLGPGLTNNMRVKLEVHNELEIKTIYNVIGT 368
Query: 279 VH----PEKLVIVSGHIDSWDVGQGAMDDGGGLF--ISWAAPVILKRLNLIPKRTVRSIF 332
++ P++ V++ H DSW G G + IS ++K+ P+RT+
Sbjct: 369 IYGQEEPDRYVLMGNHRDSWVFGAVDASTGTAVTAEISRGFGELMKK-GWRPRRTIMMCS 427
Query: 333 WTAEELGLVGAYAYEEAH 350
W EE L+G+ + E H
Sbjct: 428 WGGEEFSLIGSREWVEQH 445
>SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 45.6 bits (103), Expect = 9e-05
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 252 NIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLF--I 309
N + +++ T+ N I + G P+++V+ H D+W G G + +
Sbjct: 674 NTTTRLIVNNEFVTRPGYNVIGTITGQEEPDRIVLYGNHRDAWVFGGVDSSSGSAVMMEL 733
Query: 310 SWAAPVILKRLNLIPKRTVRSIFWTAEELGLVGA 343
S +LK P+RT+ W EE GL+G+
Sbjct: 734 SRGLGYLLKNKKWRPRRTIMLCSWAVEEYGLIGS 767
>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
Length = 688
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 270 NTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGG--LFISWAAPVILKRLNLIPKRT 327
N I ++G P++ VIV H DSW G G + +S +LKR P+RT
Sbjct: 303 NVIGTIRGREEPDRYVIVGNHRDSWVFGASDPSSGTAIQMEVSRGLGELLKR-GWRPRRT 361
Query: 328 VRSIFWTAEELGLVGAYAYEEAH 350
+ W +EE G+ G+ + E H
Sbjct: 362 IILCSWDSEERGVSGSTEWVEEH 384
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 43.6 bits (98), Expect = 4e-04
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 252 NIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISW 311
N+ LN+ + + L + + I + G P++LVI+ H D+W GA+D +
Sbjct: 260 NLQLNMHIITELSINTTYDVIATITGREEPDRLVILGNHRDAWVF--GAVDPVTATAATM 317
Query: 312 -AAPVILKRLNLI--PKRTVRSIFWTAEELGLVGAYAYEE 348
A + K LN P+R++ W AEE G++G+ + E
Sbjct: 318 ETARGLSKLLNASWRPRRSIMLCSWGAEEHGIIGSTEWVE 357
>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 39.5 bits (88), Expect = 0.006
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 265 TKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPV--ILKRLNL 322
TK N I + G P++ VI+ H D+W G G + + + + +LK+
Sbjct: 241 TKSIYNVIGTIAGREEPDRYVILGNHRDAWVFGASDPSSGTAILMELSRGLGNLLKK-GW 299
Query: 323 IPKRTVRSIFWTAEELGLVGAYAYEEAH 350
P+RT+ W AEE + G+ + E H
Sbjct: 300 RPRRTIILCSWDAEEQFVSGSTEWVEEH 327
>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
Length = 531
Score = 37.9 bits (84), Expect = 0.017
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 282 EKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPVI--LKRLNLIPKRTVRSIFWTAEELG 339
++LVIV H D+W G G G + A V+ L + P+RT+ W EE+G
Sbjct: 331 DQLVIVGCHRDAWVFG-GTDGSSGTAALMEVARVLGELLKKGWRPRRTIVMASWGGEEMG 389
Query: 340 LVGAYAYEEAH 350
+G+ + E H
Sbjct: 390 TIGSTEWTEEH 400
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 32.3 bits (70), Expect = 0.87
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 137 RSASTPPEGITAEVIVFENYDQLDKALDEDVR--GKIVLYDPIFTTYSETNQYR 188
R+ PPEG+ + IV + D L D+ + GK++ Y+ + T ++YR
Sbjct: 1957 RTGELPPEGLKSPSIVVQGNDSLLVQWDQPTKPNGKLIGYEVLMATVDVPSEYR 2010
>SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 309
Score = 32.3 bits (70), Expect = 0.87
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 237 LEDADLIRRMYDR-GENIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWD 295
LE DL+ ++YD G+++ N+ +T+ + + + D +K+ SG+ + W
Sbjct: 83 LEIIDLMAKVYDSLGDDLAGNLYRHTTMTDEERQKLVDDHFLFRGKDKMQAASGYHEFWP 142
Query: 296 VGQGAMDDGGGLFISW 311
G+G + F++W
Sbjct: 143 EGRGIFINKAKTFLNW 158
>SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19)
Length = 380
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVG 297
+ + + + L+ + N I + G P++ VI+ H D+W G
Sbjct: 313 VRVFVDNKLEKRSVHNVIATINGDEEPDRYVILGSHRDAWVFG 355
>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
Length = 1067
Score = 29.5 bits (63), Expect = 6.1
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 225 DEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRNTIIDLKGSVHPEKL 284
DEA ++ + L+ AD+ R D+ + I+ IK + L ++NT K L
Sbjct: 786 DEATEL---TLELDGADIRAREEDKNKFIIRVIKDNERLIALAAKNTRDMEKWRT---AL 839
Query: 285 VIVSGHID---SWDVGQGAMDDGGGLFISWAAPVILKRLNLIPKRTVRSIFWTAEELGLV 341
I SG I D G DD +++ APV L+R++ RT+ EE+ V
Sbjct: 840 RIESGFIKLTMPGDTSSGIYDDDDADYVTPLAPVGLQRVSNGHARTITG----TEEVETV 895
Query: 342 G--AYAYEEA 349
G YEEA
Sbjct: 896 GDKEDLYEEA 905
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,135
Number of Sequences: 59808
Number of extensions: 618231
Number of successful extensions: 1361
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 18
length of query: 472
length of database: 16,821,457
effective HSP length: 85
effective length of query: 387
effective length of database: 11,737,777
effective search space: 4542519699
effective search space used: 4542519699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -