BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001274-TA|BGIBMGA001274-PA|IPR003137|Protease-associated PA, IPR007484|Peptidase M28 (472 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z78417-11|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 56 5e-08 U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 52 9e-07 U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 52 9e-07 U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 52 9e-07 Z78417-10|CAI70407.1| 700|Caenorhabditis elegans Hypothetical p... 41 0.002 AC006748-4|AAF60512.2| 371|Caenorhabditis elegans Hypothetical ... 34 0.19 Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 31 1.3 Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 31 1.3 AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 31 1.8 AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 31 2.3 AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 31 2.3 AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 31 2.3 AC006695-10|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 31 2.3 AC006695-9|AAK73902.2| 576|Caenorhabditis elegans Receptor medi... 31 2.3 AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor medi... 31 2.3 AC006695-7|AAL65796.1| 613|Caenorhabditis elegans Receptor medi... 31 2.3 AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor medi... 31 2.3 AC006695-5|AAF39980.1| 589|Caenorhabditis elegans Receptor medi... 31 2.3 U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 30 4.1 U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 30 4.1 AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 30 4.1 Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 29 7.1 Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 7.1 AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 7.1 AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 29 7.1 >Z78417-11|CAB01688.2| 745|Caenorhabditis elegans Hypothetical protein C35C5.2 protein. Length = 745 Score = 56.0 bits (129), Expect = 5e-08 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 10/113 (8%) Query: 247 YDRGENIVLNIKMSSTL----DTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMD 302 Y G ++ N K+ T+ + + +N + +KGS P+K V+VS H D+W GA+D Sbjct: 314 YRYGPGLINNQKLRVTVHAENEERKIQNIMGYIKGSQEPDKFVLVSNHYDAWT--YGAVD 371 Query: 303 DGGG----LFISWAAPVILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHR 351 G L +S A + IP R++ W AEE GL+G+ + E +R Sbjct: 372 PNSGTSTLLEVSRALKQYQNQTGWIPARSILFAHWDAEEYGLIGSTEFAEEYR 424 >U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical protein R57.1b protein. Length = 576 Score = 52.0 bits (119), Expect = 9e-07 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314 L+I + S L TK RN I ++GS P+ +++ H D+W G + G + A Sbjct: 333 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 392 Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352 ++ + + P RT+ W AEE GL+G+ + E N Sbjct: 393 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432 >U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical protein R57.1c protein. Length = 751 Score = 52.0 bits (119), Expect = 9e-07 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314 L+I + S L TK RN I ++GS P+ +++ H D+W G + G + A Sbjct: 333 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 392 Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352 ++ + + P RT+ W AEE GL+G+ + E N Sbjct: 393 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432 >U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical protein R57.1a protein. Length = 770 Score = 52.0 bits (119), Expect = 9e-07 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314 L+I + S L TK RN I ++GS P+ +++ H D+W G + G + A Sbjct: 352 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 411 Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352 ++ + + P RT+ W AEE GL+G+ + E N Sbjct: 412 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 451 >Z78417-10|CAI70407.1| 700|Caenorhabditis elegans Hypothetical protein C35C5.11 protein. Length = 700 Score = 40.7 bits (91), Expect = 0.002 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 22/127 (17%) Query: 247 YDRGENIVLNIKMSSTLDTKVS----RNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMD 302 Y G ++ N K+ T+ K +N + +KGS P+K V+V H D+W GA+D Sbjct: 308 YRYGPGLINNQKLRVTVHAKNEERKIQNVLGYIKGSQEPDKFVLVGNHYDAWT--YGAVD 365 Query: 303 DGGGLFISWAAPVILKRL-NLIPKRTV------------RSIF---WTAEELGLVGAYAY 346 LK NL R V RSI W AEE GL+G+ + Sbjct: 366 PNSVTSTLLEVTRALKAYQNLTGWRPVTFTLVLKMGFLTRSILFAHWDAEEYGLIGSTEF 425 Query: 347 EEAHRNE 353 E HR + Sbjct: 426 AEEHRTQ 432 >AC006748-4|AAF60512.2| 371|Caenorhabditis elegans Hypothetical protein Y39A3B.1 protein. Length = 371 Score = 34.3 bits (75), Expect = 0.19 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 282 EKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPVILKRLNLIPKR--TVRSIFWTAEELG 339 +K++I+S + D+ + QG D+G G+ A +L L+ + R T+ +F+ + Sbjct: 97 DKMMILSANYDTLEGNQGVDDNGSGVAAVLEAARVLSTLDNLYSRQNTIVYVFFDMKHKA 156 Query: 340 LVGAYAYEE 348 L G++A+ E Sbjct: 157 LAGSHAFVE 165 >Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein F52G2.2a protein. Length = 1319 Score = 31.5 bits (68), Expect = 1.3 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 63 TYDQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVP 111 TY Q F D FG +E +ER + Y +EL IN I +E VP Sbjct: 289 TYPQSVAFADTFGKVNVAAESMERGVTYRVELA----INIIDSEANNVP 333 >Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein F52G2.2b protein. Length = 1129 Score = 31.5 bits (68), Expect = 1.3 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 63 TYDQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVP 111 TY Q F D FG +E +ER + Y +EL IN I +E VP Sbjct: 99 TYPQSVAFADTFGKVNVAAESMERGVTYRVELA----INIIDSEANNVP 143 >AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical protein Y48G10A.2 protein. Length = 375 Score = 31.1 bits (67), Expect = 1.8 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 51 LNYVLQGDFKGQTYDQLAKF-VDKFGARPSGSEV-LERSIDYMIELTREEDINDIVTEEL 108 +N L+G K + Y +A + K R E L R+ DY+ ELT + V E + Sbjct: 303 VNKSLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKKAVIEYM 362 Query: 109 EVPHWVRGEEKI 120 E H ++ E I Sbjct: 363 EKKHSIKWPEHI 374 >AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-mediated endocytosis 1isoform I protein. Length = 589 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 136 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 194 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 195 EKQRIDRGY 203 >AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-mediated endocytosis 1isoform II protein. Length = 835 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 382 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 440 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 441 EKQRIDRGY 449 >AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-mediated endocytosis 1isoform IV protein. Length = 576 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 118 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 176 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 177 EKQRIDRGY 185 >AC006695-10|AAO25981.1| 555|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform f protein. Length = 555 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 102 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 160 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 161 EKQRIDRGY 169 >AC006695-9|AAK73902.2| 576|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform d protein. Length = 576 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 118 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 176 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 177 EKQRIDRGY 185 >AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform a protein. Length = 786 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 333 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 391 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 392 EKQRIDRGY 400 >AC006695-7|AAL65796.1| 613|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform e protein. Length = 613 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 160 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 218 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 219 EKQRIDRGY 227 >AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform b protein. Length = 835 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 382 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 440 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 441 EKQRIDRGY 449 >AC006695-5|AAF39980.1| 589|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform c protein. Length = 589 Score = 30.7 bits (66), Expect = 2.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281 +GDE IP A+ ++ R + G N LN STL +V + TI+D G + Sbjct: 136 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 194 Query: 282 EKLVIVSGH 290 EK I G+ Sbjct: 195 EKQRIDRGY 203 >U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective protein 19,isoform a protein. Length = 1783 Score = 29.9 bits (64), Expect = 4.1 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 54 VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112 VL G+F + A+ KF + E L+ +D++ + E +N+ E+ V Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425 Query: 113 WVRGEEKITMLEPRVKDI 130 V GEE E RV+D+ Sbjct: 426 TVVGEEADEEGEERVEDV 443 >U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective protein 19,isoform b protein. Length = 1877 Score = 29.9 bits (64), Expect = 4.1 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 54 VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112 VL G+F + A+ KF + E L+ +D++ + E +N+ E+ V Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425 Query: 113 WVRGEEKITMLEPRVKDI 130 V GEE E RV+D+ Sbjct: 426 TVVGEEADEEGEERVEDV 443 >AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type calcium channelalpha 1 subunit protein. Length = 1783 Score = 29.9 bits (64), Expect = 4.1 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 54 VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112 VL G+F + A+ KF + E L+ +D++ + E +N+ E+ V Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425 Query: 113 WVRGEEKITMLEPRVKDI 130 V GEE E RV+D+ Sbjct: 426 TVVGEEADEEGEERVEDV 443 >Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical protein W07A8.3 protein. Length = 784 Score = 29.1 bits (62), Expect = 7.1 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 65 DQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEK 119 D + +++ G +P+ E ++SI M+++ E ++ EE+++ W +G+E+ Sbjct: 653 DAFSDLLNQGGFKPTQRENQKQSIGNMLKV---EQSKNLTPEEIQIRDWTQGKER 704 >Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein F15D4.7 protein. Length = 2268 Score = 29.1 bits (62), Expect = 7.1 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 220 SQTYGDEANKIPTAAITLEDADLIRRMYDRGENI-VLNIKMSSTLDTKVSRNTIIDLKG 277 S++Y D+ ++P + D + IR + D G N+ +++ + + K+ + T + + G Sbjct: 836 SESYSDKDYRLPFMCVYTADGEPIRVLVDSGANLSIIDHGSAQRIGLKILKTTQLSITG 894 >AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical protein F15D4.7 protein. Length = 2268 Score = 29.1 bits (62), Expect = 7.1 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 220 SQTYGDEANKIPTAAITLEDADLIRRMYDRGENI-VLNIKMSSTLDTKVSRNTIIDLKG 277 S++Y D+ ++P + D + IR + D G N+ +++ + + K+ + T + + G Sbjct: 836 SESYSDKDYRLPFMCVYTADGEPIRVLVDSGANLSIIDHGSAQRIGLKILKTTQLSITG 894 >AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. Length = 784 Score = 29.1 bits (62), Expect = 7.1 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 65 DQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEK 119 D + +++ G +P+ E ++SI M+++ E ++ EE+++ W +G+E+ Sbjct: 653 DAFSDLLNQGGFKPTQRENQKQSIGNMLKV---EQSKNLTPEEIQIRDWTQGKER 704 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.316 0.135 0.392 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,060,184 Number of Sequences: 27539 Number of extensions: 470053 Number of successful extensions: 1150 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 1138 Number of HSP's gapped (non-prelim): 26 length of query: 472 length of database: 12,573,161 effective HSP length: 84 effective length of query: 388 effective length of database: 10,259,885 effective search space: 3980835380 effective search space used: 3980835380 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 61 (28.7 bits)
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