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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001274-TA|BGIBMGA001274-PA|IPR003137|Protease-associated
PA, IPR007484|Peptidase M28
         (472 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-11|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    56   5e-08
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    52   9e-07
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    52   9e-07
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    52   9e-07
Z78417-10|CAI70407.1|  700|Caenorhabditis elegans Hypothetical p...    41   0.002
AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical ...    34   0.19 
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    31   1.8  
AF357878-1|AAK27716.1|  589|Caenorhabditis elegans receptor-medi...    31   2.3  
AF357877-1|AAK27715.1|  835|Caenorhabditis elegans receptor-medi...    31   2.3  
AF357876-1|AAK27714.1|  576|Caenorhabditis elegans receptor-medi...    31   2.3  
AC006695-10|AAO25981.1|  555|Caenorhabditis elegans Receptor med...    31   2.3  
AC006695-9|AAK73902.2|  576|Caenorhabditis elegans Receptor medi...    31   2.3  
AC006695-8|AAF39978.1|  786|Caenorhabditis elegans Receptor medi...    31   2.3  
AC006695-7|AAL65796.1|  613|Caenorhabditis elegans Receptor medi...    31   2.3  
AC006695-6|AAF39979.1|  835|Caenorhabditis elegans Receptor medi...    31   2.3  
AC006695-5|AAF39980.1|  589|Caenorhabditis elegans Receptor medi...    31   2.3  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    30   4.1  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    30   4.1  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    30   4.1  
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    29   7.1  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   7.1  
AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   7.1  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    29   7.1  

>Z78417-11|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 247 YDRGENIVLNIKMSSTL----DTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMD 302
           Y  G  ++ N K+  T+    + +  +N +  +KGS  P+K V+VS H D+W    GA+D
Sbjct: 314 YRYGPGLINNQKLRVTVHAENEERKIQNIMGYIKGSQEPDKFVLVSNHYDAWT--YGAVD 371

Query: 303 DGGG----LFISWAAPVILKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHR 351
              G    L +S A      +   IP R++    W AEE GL+G+  + E +R
Sbjct: 372 PNSGTSTLLEVSRALKQYQNQTGWIPARSILFAHWDAEEYGLIGSTEFAEEYR 424


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 52.0 bits (119), Expect = 9e-07
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314
           L+I + S L TK  RN I  ++GS  P+  +++  H D+W  G    + G  +    A  
Sbjct: 333 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 392

Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352
           ++  +   +  P RT+    W AEE GL+G+  + E   N
Sbjct: 393 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 52.0 bits (119), Expect = 9e-07
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314
           L+I + S L TK  RN I  ++GS  P+  +++  H D+W  G    + G  +    A  
Sbjct: 333 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 392

Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352
           ++  +   +  P RT+    W AEE GL+G+  + E   N
Sbjct: 393 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 432


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 52.0 bits (119), Expect = 9e-07
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 255 LNIKMSSTLDTKVSRNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAP 314
           L+I + S L TK  RN I  ++GS  P+  +++  H D+W  G    + G  +    A  
Sbjct: 352 LSINVHSELRTKRIRNVIGYIRGSEEPDSYIMLGNHFDAWVYGSIDPNSGTAVLAEVARA 411

Query: 315 VI--LKRLNLIPKRTVRSIFWTAEELGLVGAYAYEEAHRN 352
           ++  +   +  P RT+    W AEE GL+G+  + E   N
Sbjct: 412 MMQTINETSWKPARTIVFNAWDAEEFGLIGSTEFVEEFVN 451


>Z78417-10|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 247 YDRGENIVLNIKMSSTLDTKVS----RNTIIDLKGSVHPEKLVIVSGHIDSWDVGQGAMD 302
           Y  G  ++ N K+  T+  K      +N +  +KGS  P+K V+V  H D+W    GA+D
Sbjct: 308 YRYGPGLINNQKLRVTVHAKNEERKIQNVLGYIKGSQEPDKFVLVGNHYDAWT--YGAVD 365

Query: 303 DGGGLFISWAAPVILKRL-NLIPKRTV------------RSIF---WTAEELGLVGAYAY 346
                         LK   NL   R V            RSI    W AEE GL+G+  +
Sbjct: 366 PNSVTSTLLEVTRALKAYQNLTGWRPVTFTLVLKMGFLTRSILFAHWDAEEYGLIGSTEF 425

Query: 347 EEAHRNE 353
            E HR +
Sbjct: 426 AEEHRTQ 432


>AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical
           protein Y39A3B.1 protein.
          Length = 371

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 282 EKLVIVSGHIDSWDVGQGAMDDGGGLFISWAAPVILKRLNLIPKR--TVRSIFWTAEELG 339
           +K++I+S + D+ +  QG  D+G G+     A  +L  L+ +  R  T+  +F+  +   
Sbjct: 97  DKMMILSANYDTLEGNQGVDDNGSGVAAVLEAARVLSTLDNLYSRQNTIVYVFFDMKHKA 156

Query: 340 LVGAYAYEE 348
           L G++A+ E
Sbjct: 157 LAGSHAFVE 165


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
           protein F52G2.2a protein.
          Length = 1319

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 63  TYDQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVP 111
           TY Q   F D FG     +E +ER + Y +EL     IN I +E   VP
Sbjct: 289 TYPQSVAFADTFGKVNVAAESMERGVTYRVELA----INIIDSEANNVP 333


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
           protein F52G2.2b protein.
          Length = 1129

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 63  TYDQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVP 111
           TY Q   F D FG     +E +ER + Y +EL     IN I +E   VP
Sbjct: 99  TYPQSVAFADTFGKVNVAAESMERGVTYRVELA----INIIDSEANNVP 143


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 51  LNYVLQGDFKGQTYDQLAKF-VDKFGARPSGSEV-LERSIDYMIELTREEDINDIVTEEL 108
           +N  L+G  K + Y  +A   + K   R    E  L R+ DY+ ELT  +     V E +
Sbjct: 303 VNKSLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKKAVIEYM 362

Query: 109 EVPHWVRGEEKI 120
           E  H ++  E I
Sbjct: 363 EKKHSIKWPEHI 374


>AF357878-1|AAK27716.1|  589|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform I protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 136 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 194

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 195 EKQRIDRGY 203


>AF357877-1|AAK27715.1|  835|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform II protein.
          Length = 835

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 382 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 440

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 441 EKQRIDRGY 449


>AF357876-1|AAK27714.1|  576|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform IV protein.
          Length = 576

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 118 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 176

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 177 EKQRIDRGY 185


>AC006695-10|AAO25981.1|  555|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform f protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 102 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 160

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 161 EKQRIDRGY 169


>AC006695-9|AAK73902.2|  576|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform d protein.
          Length = 576

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 118 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 176

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 177 EKQRIDRGY 185


>AC006695-8|AAF39978.1|  786|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform a protein.
          Length = 786

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 333 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 391

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 392 EKQRIDRGY 400


>AC006695-7|AAL65796.1|  613|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform e protein.
          Length = 613

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 160 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 218

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 219 EKQRIDRGY 227


>AC006695-6|AAF39979.1|  835|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform b protein.
          Length = 835

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 382 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 440

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 441 EKQRIDRGY 449


>AC006695-5|AAF39980.1|  589|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform c protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 223 YGDEANKIPTAAITLEDADLIRRMYDRGENIVLNIKMSSTLDTKVSRN-TIIDLKGSVHP 281
           +GDE   IP  A+ ++     R +   G N  LN    STL  +V  + TI+D  G +  
Sbjct: 136 HGDEEGSIPGNALVVDAKKQFRALSGFG-NAFLNRFQCSTLPNQVLESVTIVDTPGILSG 194

Query: 282 EKLVIVSGH 290
           EK  I  G+
Sbjct: 195 EKQRIDRGY 203


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 54  VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112
           VL G+F  +     A+    KF  +    E L+  +D++ +    E +N+   E+  V  
Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425

Query: 113 WVRGEEKITMLEPRVKDI 130
            V GEE     E RV+D+
Sbjct: 426 TVVGEEADEEGEERVEDV 443


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 54  VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112
           VL G+F  +     A+    KF  +    E L+  +D++ +    E +N+   E+  V  
Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425

Query: 113 WVRGEEKITMLEPRVKDI 130
            V GEE     E RV+D+
Sbjct: 426 TVVGEEADEEGEERVEDV 443


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 54  VLQGDFKGQTYDQLAK-FVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPH 112
           VL G+F  +     A+    KF  +    E L+  +D++ +    E +N+   E+  V  
Sbjct: 366 VLSGEFSKEREKARARGLFQKFREKQQLEEDLKGYLDWITQAEDIEPVNEDEQEDEPVAQ 425

Query: 113 WVRGEEKITMLEPRVKDI 130
            V GEE     E RV+D+
Sbjct: 426 TVVGEEADEEGEERVEDV 443


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 65  DQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEK 119
           D  +  +++ G +P+  E  ++SI  M+++   E   ++  EE+++  W +G+E+
Sbjct: 653 DAFSDLLNQGGFKPTQRENQKQSIGNMLKV---EQSKNLTPEEIQIRDWTQGKER 704


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 220 SQTYGDEANKIPTAAITLEDADLIRRMYDRGENI-VLNIKMSSTLDTKVSRNTIIDLKG 277
           S++Y D+  ++P   +   D + IR + D G N+ +++   +  +  K+ + T + + G
Sbjct: 836 SESYSDKDYRLPFMCVYTADGEPIRVLVDSGANLSIIDHGSAQRIGLKILKTTQLSITG 894


>AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 220 SQTYGDEANKIPTAAITLEDADLIRRMYDRGENI-VLNIKMSSTLDTKVSRNTIIDLKG 277
           S++Y D+  ++P   +   D + IR + D G N+ +++   +  +  K+ + T + + G
Sbjct: 836 SESYSDKDYRLPFMCVYTADGEPIRVLVDSGANLSIIDHGSAQRIGLKILKTTQLSITG 894


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 65  DQLAKFVDKFGARPSGSEVLERSIDYMIELTREEDINDIVTEELEVPHWVRGEEK 119
           D  +  +++ G +P+  E  ++SI  M+++   E   ++  EE+++  W +G+E+
Sbjct: 653 DAFSDLLNQGGFKPTQRENQKQSIGNMLKV---EQSKNLTPEEIQIRDWTQGKER 704


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,184
Number of Sequences: 27539
Number of extensions: 470053
Number of successful extensions: 1150
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 26
length of query: 472
length of database: 12,573,161
effective HSP length: 84
effective length of query: 388
effective length of database: 10,259,885
effective search space: 3980835380
effective search space used: 3980835380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)

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