Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001273-TA|BGIBMGA001273-PA|IPR012776|Trimethyllysine
dioxygenase, IPR003819|Taurine catabolism dioxygenase TauD/TfdA
         (232 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.4  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 1  YTFKSFNQVQPSAEATETVCKALGGIQHTIFGATWEFTTV 40
          +T  S     P+    +TV K  G     IFG  W F+ +
Sbjct: 32 WTATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCI 71


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 185 LVPGLVMVIDNFRLLHGRNGFTGRRVLCGAYVSRSDWLDKARSLNLI 231
           L+ G+ M+ID  + +H         ++C +YV  S  +  A  + LI
Sbjct: 781 LINGVWMIIDPAKAMHHYPTREDNLLVCNSYVDASYMIAFAYPIMLI 827


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 133 DKNTEDIKQIRFNVYDRSAMAFRSGR 158
           +KN+  +    F ++ R+ M F+  R
Sbjct: 41  EKNSASLNSENFGIFKRALMGFQGVR 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,044
Number of Sequences: 429
Number of extensions: 3327
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 232
length of database: 140,377
effective HSP length: 56
effective length of query: 176
effective length of database: 116,353
effective search space: 20478128
effective search space used: 20478128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)