GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001273-TA|BGIBMGA001273-PA|IPR012776|Trimethyllysine
dioxygenase, IPR003819|Taurine catabolism dioxygenase TauD/TfdA
         (232 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   2.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   3.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 159 DCRLYYRSLKNLARYY 174
           DCR YY  L+  AR Y
Sbjct: 177 DCRKYYICLEGTAREY 192


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 159 DCRLYYRSLKNLARYY 174
           DCR YY  L+  AR Y
Sbjct: 177 DCRKYYICLEGTAREY 192


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 170 LARYYENKENQWIFKLVPGLVMVIDNF--RLLHGRNGFT 206
           LA  ++ + N W+F+    + + +D F   L  G N  T
Sbjct: 503 LAPQFDERGNPWLFRNQKDMFIELDRFAVSLKQGTNTIT 541


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 208 RRVLCGAYVSRSDWLDKARSLNLIQ 232
           +  L  AYVS+    + AR+LNL +
Sbjct: 260 KEFLFNAYVSKQKRWELARNLNLTE 284


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,704
Number of Sequences: 317
Number of extensions: 2561
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 114,650
effective HSP length: 55
effective length of query: 177
effective length of database: 97,215
effective search space: 17207055
effective search space used: 17207055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)