Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001273-TA|BGIBMGA001273-PA|IPR012776|Trimethyllysine
dioxygenase, IPR003819|Taurine catabolism dioxygenase TauD/TfdA
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 0.76
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 28 1.0
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 28 1.3
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 5.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.1
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 7.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 9.4
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 9.4
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.7 bits (61), Expect = 0.76
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 32 GATWEFTTVADHADTAYTNLPLAAHNDNIYWTEAAGLQILHCIEHT--NGTGGETILVDG 89
G W +D Y + PLA N W+ L +L H NG + V G
Sbjct: 265 GEHWRVVIDSDQTGDIYLHKPLADFNVAQEWSTFGSLDLLSYGVHVYDNGNITSIVAVSG 324
Query: 90 FYG---ATCLKEDHPEDYE 105
+G A + +HPE E
Sbjct: 325 THGTHVAGIIGANHPETPE 343
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 111 EIEGEYIERRHHFTHSAPVIQID--KNTEDIK----QIRFNVY--DRSAMAFRSGRDCRL 162
E+E Y ++ FTHSAP ++ +N I + F Y +R AM+F G+DC +
Sbjct: 3 ELERVYQSIKNIFTHSAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLV 62
Query: 163 YY 164
+
Sbjct: 63 LF 64
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 77 TNGTGGETILVDGFYGATCLKEDHPEDYEFLTTYEIEGEYIER 119
T+G E IL+D G T + +D P+ E L Y+ G ER
Sbjct: 314 THGCCAEKILIDNEDGTTTVIDDLPKVREILYNYQRPGINPER 356
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 74 IEHTNGTGGETILVDGFYGATCLKEDHPEDYEFLTTYEIEGEYIER 119
I+ T G GG T+L DGF + DY Y +E E+I++
Sbjct: 42 IQATYGNGGYTVLKDGF------QVSRTSDY---ILYSVEAEHIDK 78
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 59 NIYWTEAA-GLQILHCIEHTNGTGGETILVDGFYGATCLKED 99
NIY + +A L+IL + + E IL++GF CL +D
Sbjct: 4383 NIYNSISADNLKILSAVHEIHLNETEKILLEGFSKIICLPQD 4424
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 96 LKEDHPEDYEFLTTYEIEGEYI 117
LKEDHP+ +E L Y + ++I
Sbjct: 336 LKEDHPDVFEKLKEYVNQNKFI 357
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 71 LHCIEHTNGTGGETILVDGFYGATCLKEDHPEDYEFLTT--YEIEGEYIERRHHFTH 125
LH +E E++ V G YG KE HP Y T R HH +H
Sbjct: 19 LHAMERYKPATSESLYVKGHYGPHPHKE-HPAAYVAAKTGFNATSRRQSVREHHSSH 74
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 167 LKNLARYYENKENQWIFKLVPGLVMVIDNFRLLHGRNGFTGRRVLCGAYVSRSDWLDKA- 225
+KN+ RYY+ ++ K +P L I + + + G + R G + + D DKA
Sbjct: 6 IKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIG-FKNEED-ADKAI 63
Query: 226 RSLN 229
R LN
Sbjct: 64 RYLN 67
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 92 GATCLKEDHPEDYEFLTTYEIEGEYIERR 120
G+ L E+HP+ + L YEIE E + +
Sbjct: 311 GSNDLPENHPQRRQTLEFYEIEIEVLREK 339
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,150,221
Number of Sequences: 5004
Number of extensions: 49724
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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