GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001273-TA|BGIBMGA001273-PA|IPR012776|Trimethyllysine
dioxygenase, IPR003819|Taurine catabolism dioxygenase TauD/TfdA
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163...    30   1.4  
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    29   2.4  
02_01_0559 - 4113937-4114113,4115305-4115853                           29   4.2  
06_02_0036 - 10844876-10846173,10846490-10847012                       28   5.6  
11_06_0142 - 20564572-20565951                                         27   9.8  

>03_01_0207 -
           1633177-1633372,1633623-1633688,1633778-1633859,
           1633942-1634037,1634413-1634518,1634602-1634661,
           1635114-1635234,1635929-1636040,1636118-1636217,
           1636328-1636382,1636489-1636595,1636798-1636850,
           1636989-1637114,1637909-1638065,1638226-1638421,
           1638917-1639073,1639139-1639379,1639475-1639605,
           1639704-1639826,1639929-1639984,1640610-1640767,
           1640847-1640984,1641070-1641123
          Length = 896

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 16  TETVCKALGGIQHTIFGATWEFTTVADHADTAYT 49
           TE VC     ++   F   WE T  AD   T YT
Sbjct: 511 TEDVCSLRADVERLAFSVIWEMTPHADIISTRYT 544


>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 98  EDHPEDYEFLTTYEIEGEYIERRHHFTHSAPVIQIDKNTEDIKQIRFNVYDRS 150
           ++H + Y  L+T   +G Y E   +   +A   Q D N   +KQ+  ++Y R+
Sbjct: 597 KNHAQVYVDLSTCYSKGNYSELEEYIQLNAEKFQSDNNLGLVKQVLSSMYKRN 649


>02_01_0559 - 4113937-4114113,4115305-4115853
          Length = 241

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 78  NGTGGETILVDGFYGATCLKEDHPEDY 104
           N    ET+ VDGF+GA   +  HP  Y
Sbjct: 120 NDVAAETVTVDGFFGADPGQLFHPSSY 146


>06_02_0036 - 10844876-10846173,10846490-10847012
          Length = 606

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 23  LGGIQHTIFGATWEFTTVADHADTAYTNLPLAAHNDNIYWTEAAGLQILHCIEHT 77
           L  + +T  G TW +  + D        +P A  N    WT     Q  H ++HT
Sbjct: 451 LDDVAYTTSGTTWHYKCLTDKM-----RMPRAEVNHKPMWTRYLSKQGCHSLQHT 500


>11_06_0142 - 20564572-20565951
          Length = 459

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 24  GGIQHTIFGATWEFTTVADHADTAYTNLPLAAHNDNIYWTEAAGLQILHCIEHTNGTGGE 83
           GG++  +    W  +   D A T    + +    D +Y+ E   L          G GG+
Sbjct: 318 GGLEFLVVERRWRRSGSDDDASTTEMYVVMLRPLD-LYFYEQVSLP--------GGVGGD 368

Query: 84  TILVDGFYGATCLK-EDHP 101
             L  G  GA CL+ ED+P
Sbjct: 369 LALFVGHAGAACLRVEDYP 387


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,230,062
Number of Sequences: 37544
Number of extensions: 307136
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 5
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)