GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001273-TA|BGIBMGA001273-PA|IPR012776|Trimethyllysine
dioxygenase, IPR003819|Taurine catabolism dioxygenase TauD/TfdA
         (232 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    30   1.2  
At1g21680.1 68414.m02713 expressed protein similar to TolB prote...    29   2.0  
At4g01170.1 68417.m00155 hypothetical protein                          27   8.1  
At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1607

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 136 TEDIKQIRFNVYDRSAMAFRSGRDCRLYYRSLKNLARYYENKENQWIFKLVPGLVMVIDN 195
           TEDI+ I   + D S + F           SL+ L  Y  + EN +  +L  GL  + D 
Sbjct: 932 TEDIEGI---LLDTSNLTFDVKPGAFENMLSLRFLKIYCSSYENHYSLRLPKGLKFLPDE 988

Query: 196 FRLLHGRN 203
            RLLH  N
Sbjct: 989 LRLLHWEN 996


>At1g21680.1 68414.m02713 expressed protein similar to TolB protein
           precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs
           gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300
           and gb|N65244 come from this gene
          Length = 706

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 76  HTNGTGGETILVDGFYGATCLKEDHPEDYEFLTTYEIEG---EYIERRHHFTHSAPVIQI 132
           H NGTG   ++  G  G T      P+    + T +  G   E I   HH+     +  +
Sbjct: 584 HPNGTGLRKLIQSGTGGRTNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTV 643

Query: 133 DKNTEDIKQIRFNVYDRSAMAF 154
             +  +++++  N Y+    A+
Sbjct: 644 KLDGSNVRRLTHNSYEDGTPAW 665


>At4g01170.1 68417.m00155 hypothetical protein 
          Length = 444

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 85  ILVDGFYGATCLKEDHPEDYEFLTTYEIEGEYIERRHHFTHSAPVIQIDKNTEDIKQIR 143
           ++ DG+    CL ED  +D      Y +  +++ R       +P +++D    DI++++
Sbjct: 7   VIDDGYIPIICLDEDDDDDLMIDKDYNVFLDHLRR----GSVSPRLEVDNGESDIRKLK 61


>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 100 HPEDYEFLTTYEIEGEYIERRHHFTHSAPVIQIDKNTEDIKQIRFNVYDRSAMAFRS-GR 158
           HPE  E   T +   + I++  +   +A V+  D   E  +QI  +  ++ A+AF     
Sbjct: 673 HPEKNEIYMTMKKIWDEIKKMGYVPDTASVLH-DLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 159 DCRLYYRSLKNLARYYE-NKENQWIFKLVPGLVMVIDNFRLLHGRNGFTGRR 209
             +   R +KNL    + +   ++I KLV   ++V D  R  H ++GF   R
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,871,518
Number of Sequences: 28952
Number of extensions: 250248
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 12,070,560
effective HSP length: 79
effective length of query: 153
effective length of database: 9,783,352
effective search space: 1496852856
effective search space used: 1496852856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)