GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001272-TA|BGIBMGA001272-PA|IPR002469|Peptidase S9B,
dipeptidylpeptidase IV N-terminal, IPR001375|Peptidase S9, prolyl
oligopeptidase active site region
         (737 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.73 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   6.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 247 TAAPQQITTTGEINVIYHGVPDWVYEEEVFSSNNAMWFSADGQK 290
           TAAP Q+ T   ++ + + +  W +  E++ +   + F AD  K
Sbjct: 451 TAAPPQLPTEESVDALCNTLHHWHHCPEIYKAIEGIRFIADHTK 494


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 295 TFDDTNVRVMPVPHYGVPGNINYQYTQHHQIRYPKPGTTNPTVTVTLRDL 344
           T D ++ R+  +    VP ++   +  ++ I   +P T    V +T  D+
Sbjct: 599 TLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDM 648


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 376 LMWTNRVQTTLRVVLCTLGQTACTQIYQYTETNG-WI 411
           L W    + +L   +  L  TAC  +Y+  E +G WI
Sbjct: 29  LRWFEIWRDSLPTKMRELNATACAALYERVEWSGPWI 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,520
Number of Sequences: 429
Number of extensions: 8888
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 737
length of database: 140,377
effective HSP length: 63
effective length of query: 674
effective length of database: 113,350
effective search space: 76397900
effective search space used: 76397900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)