Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001271-TA|BGIBMGA001271-PA|undefined
         (938 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    31   0.058
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   2.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   6.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   6.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   8.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   8.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   8.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.7 bits (66), Expect = 0.058
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 206 NNKIMTYDLSSPISPSTEGHVSCFEIGDSVITKTKCSLYHKPEV---IEASVEDEVSTQ- 261
           ++K++T   S PI       +S  ++  +    +KCS+   PE+   +E    D++ T+ 
Sbjct: 249 DHKMLTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTEL 308

Query: 262 --DINQNSKSKNNFELSKDRNIDIVDSVDCIRKSFEREEHLQKDSDDDLETLRQTALNTK 319
              +N +   +   E   D+ +D+ DS+D ++   + ++ +    D   E  R  ++  K
Sbjct: 309 STGMNDDIPPETEEEEENDKKLDL-DSIDMMQLPIQLDDGIDILDDVKCEDERVISIPDK 367


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 228 CFEIGDSVITKTKCSLYHKPEVIE 251
           C E+G SV+ K   +LY   E+IE
Sbjct: 135 CKELGISVVQKVSHTLYKLDEIIE 158


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 273 FELSKDRNIDIVDSVDCIRKSFEREEHLQKDSDDDLETLRQT 314
           F  S +    + D  +C  ++ + E H+ KD  D++  L++T
Sbjct: 20  FIYSNETIAQVTDDENC--ETLQSEVHITKDEYDEIGRLKRT 59


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 273 FELSKDRNIDIVDSVDCIRKSFEREEHLQKDSDDDLETLRQT 314
           F  S +    + D  +C  ++ + E H+ KD  D++  L++T
Sbjct: 20  FIYSNETIAQVTDDENC--ETLQSEVHITKDEYDEIGRLKRT 59


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 577 KALNNLPKSEQIEYRNLVKRMAELEKMKESRQSAM 611
           KA NN+PK   + Y N    +  +   ++ + SA+
Sbjct: 518 KAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSAL 552


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 333 INENKTLSDDEDSDTAELR 351
           ++E++T SD+E++DT  L+
Sbjct: 314 LSESETSSDEEEADTRPLK 332


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 750 PLKIDHKNTVSIKNTKSIKEHKESLSAPTPMLSIEIDVGSK 790
           P  I     VS++  K +  H ++   PTP +  +   GSK
Sbjct: 710 PRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSK 750


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 750 PLKIDHKNTVSIKNTKSIKEHKESLSAPTPMLSIEIDVGSK 790
           P  I     VS++  K +  H ++   PTP +  +   GSK
Sbjct: 706 PRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSK 746


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 577 KALNNLPKSEQIEYRNLVKRMAELEKMKESRQSAM 611
           KA NN+PK   + Y N    +  +   ++ + SA+
Sbjct: 518 KAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSAL 552


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.124    0.331 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,001
Number of Sequences: 429
Number of extensions: 10057
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 11
length of query: 938
length of database: 140,377
effective HSP length: 64
effective length of query: 874
effective length of database: 112,921
effective search space: 98692954
effective search space used: 98692954
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 48 (23.4 bits)