Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    31   0.20 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   2.5  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    27   3.3  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   5.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   5.8  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 310 WRIWNGGPFRSPGLNAIALYVGHSLCAHLFPFHWK-IPNMETHTIKLLEAVWGTALWV 366
           W ++ GG    PGL AIA   G  +   +  FH + IP  E H++  +     ++LW+
Sbjct: 326 WGVFKGG---EPGLFAIAENYGKQILFFVSIFHHQVIPMTEEHSVSSISVPKSSSLWL 380


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 69   RSIMMFFLGMSLNTIYGSNVLQELRIFGV-LQRLAVAYLVAAGF 111
            ++I  F+  +S+N IY +++   LRI+GV   R A+ + V++ F
Sbjct: 1550 KAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVF 1593


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 210 YGGPPTDPEGLLGCVTSAVQALIGIQAGATVLLQ 243
           +G PPTD E ++G +T+++    G  AG+ ++++
Sbjct: 320 FGVPPTDVEIIIGSLTTSLAGGGGFCAGSELMVE 353


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 15  GYWWMEHATWNGMVAGD 31
           G WW+  A+WN + +GD
Sbjct: 514 GRWWLVGASWNNVPSGD 530


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 209 VYGGPPTDPEGLLGCVTSAVQALIGIQAGATVLLQRSHK 247
           +  GP   P G +G V   V  +  I +G T LLQ S +
Sbjct: 653 IRAGPSPLPNGFVGYVLPPVYKITQIHSGDTELLQLSQE 691


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 141 WVLAIVLVTVHSVITF--IIHHPDCPPGYLGPGGKHDEWVAPECSGGAAGFIDRLILGES 198
           W ++I +  +  +IT   II  P+ P  YL   GK DE +   C          +I  E 
Sbjct: 148 WRISIGINLLWGIITLVGIIFLPESPR-YLIAIGKDDEALKIMCYNNDLPLEHEIIQTEY 206

Query: 199 HLYQRSDARNVYGGPPTDPE 218
           H  +      + GGP   PE
Sbjct: 207 HTIKSDCDAELAGGPARWPE 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,811
Number of Sequences: 5004
Number of extensions: 68834
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 7
length of query: 381
length of database: 2,362,478
effective HSP length: 74
effective length of query: 307
effective length of database: 1,992,182
effective search space: 611599874
effective search space used: 611599874
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)