Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   1e-38
SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score =  157 bits (381), Expect = 1e-38
 Identities = 92/256 (35%), Positives = 138/256 (53%), Gaps = 25/256 (9%)

Query: 1   MAIVFMIFVNDGAGGYWWMEHATWN-----------------GMVAGDLVFPAFLWIMGV 43
           +++  MIFVN G GGY++  H+ WN                 G+   DLVFP F+WIMGV
Sbjct: 19  ISLTVMIFVNFGGGGYYFFAHSIWNANPGYAYVLTTSFPYIQGLTVADLVFPWFMWIMGV 78

Query: 44  CIPLSGKSAFAKGIPRWKIVMHIVRRSIMMFFLGMSLNTIYGSNVLQELRIFGVLQRLAV 103
            + LS +    K I  ++I++ I +R++++F LG+  + +     L   RI GVLQR A 
Sbjct: 79  SMVLSFRVLRRKQISTYRIIIKITKRTLLLFALGLFTSNM---GDLTNYRIPGVLQRFAA 135

Query: 104 AYLVAAGFYALTAPKFY-TPPRGACGQALKDVLSCLWC-WVLAIVLVTVHSVITFIIHHP 161
            Y V A    L  P    + PRG+    ++DV+S LW  W+L    + ++ V+T+     
Sbjct: 136 CYFVVAVIQVLAGPSVEDSQPRGSWWDGIRDVVS-LWAQWLLMFAFLIIYVVVTYATELH 194

Query: 162 DCPPGYLGPGGKHDEWVAPECSGGAAGFIDRLILGESHLYQRSDARNVYGGPPT-DPEGL 220
            CP GY GPGG  D   A  C+GG A  +D  +LG+ H+YQR   +++Y      DPEG+
Sbjct: 195 GCPRGYTGPGGISDNSSAFNCTGGMASHVDSWLLGK-HVYQRGTFKDMYRTTVAHDPEGV 253

Query: 221 LGCVTSAVQALIGIQA 236
           +G +TS     +G+QA
Sbjct: 254 MGTLTSIFIVFLGVQA 269



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 322 GLNAIALYVGHSLCAHLFPFHWKIPNMETHTIKLLEAVWGTALWVIIAHVMAKKKVFITL 381
           G+N+I +Y GH      FPF W +    TH  KL   + GT+ WV IA+ +   + F+ +
Sbjct: 330 GMNSILVYCGHEWLGKHFPFSWDLDPYYTHADKLFMNIVGTSCWVAIAYYLHWIEFFLKI 389


>SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 272 REHG-VIPINKNLWSTSFVLVTSACCLLLLSFCYTLT 307
           REHG  +PI+K +WS  F+++     ++ ++   T+T
Sbjct: 29  REHGDSLPIHKKVWSFFFIIIIFITIIITITITVTVT 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,862
Number of Sequences: 59808
Number of extensions: 523904
Number of successful extensions: 1112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 4
length of query: 381
length of database: 16,821,457
effective HSP length: 83
effective length of query: 298
effective length of database: 11,857,393
effective search space: 3533503114
effective search space used: 3533503114
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)