Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 288 FVLVTSACCLLLLSFCYTLTDAWRIWNGGP 317
           F +    C + + SF YT+ D    WN GP
Sbjct: 145 FPMDRQLCHIEIESFGYTMRDIRYKWNEGP 174


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 288 FVLVTSACCLLLLSFCYTLTDAWRIWNGGP 317
           F +    C + + SF YT+ D    WN GP
Sbjct: 84  FPMDRQLCHIEIESFGYTMRDIRYKWNEGP 113


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 288 FVLVTSACCLLLLSFCYTLTDAWRIWNGGPFRSPGLN 324
           F +    C + + SF YT+ D    WN G  +S G++
Sbjct: 145 FPMDRQLCHIEIESFGYTMRDIRYKWNAG-LQSVGIS 180


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,790
Number of Sequences: 429
Number of extensions: 4400
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 381
length of database: 140,377
effective HSP length: 59
effective length of query: 322
effective length of database: 115,066
effective search space: 37051252
effective search space used: 37051252
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)