Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27730.1 68418.m03326 expressed protein                             97   2e-20
At5g47900.1 68418.m05917 hypothetical protein                          54   1e-07
At1g18600.1 68414.m02319 rhomboid family protein contains Pfam p...    34   0.18 
At1g55325.1 68414.m06320 expressed protein                             29   3.9  
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri...    28   9.0  
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden...    28   9.0  

>At5g27730.1 68418.m03326 expressed protein
          Length = 472

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 97/369 (26%), Positives = 160/369 (43%), Gaps = 52/369 (14%)

Query: 1   MAIVFMIFVNDGAGGYWWMEHATWNGMVAGDLVFPAFLWIMGVCIPLSGKSAFAKGIPRW 60
           + +  MI V+D  G +  + HA WNG    D V P FL+I+GV I LS K    K    +
Sbjct: 46  LTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIALSLKRISNK----F 101

Query: 61  KIVMHIVRRSIMMFFLGMSL---------NTIYGSNVLQELRIFGVLQRLAVAYLVAAGF 111
           +    +  R+  + F G+ L            YG +V   +R  G+LQR+A++YLV A  
Sbjct: 102 EACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTM-MRFCGILQRIALSYLVVALV 160

Query: 112 YALTAPKFYTPPRGACGQALKDVLSCLWCWVLAIVLVTVHSVITFIIHHPDCP-PGYLGP 170
              T  K       + G+      S  W W++A  ++ ++    +  + PD     Y   
Sbjct: 161 EIFT--KDSHEENLSTGR-FSIFKSYYWHWIVAASVLVIYLATLYGTYVPDWEFVVYDKD 217

Query: 171 GGKHDEWVAPECS--------GGAAGFIDRLILGESHLY-----QRSDA---RNVYGG-- 212
              + + ++  C           A G++DR +LG +H+Y     +RS A    + Y G  
Sbjct: 218 SVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDSPYEGAI 277

Query: 213 ---------PPTDPEGLLGCVTSAVQALIGIQAGATVLLQRSHKARVSRXXXXXXXXXXX 263
                     P +PEG+L  +++ +  +IG+  G  +L  + H AR+             
Sbjct: 278 RQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTGLVLLAL 337

Query: 264 XXXXXXXSREHGVIPINKNLWSTSFVLVTSACCLLLLSFCYTLTDAWRIWNGG--PFRSP 321
                       ++P+NK L+S S++ VTS    L+ S  Y+L D    W     P +  
Sbjct: 338 GLTLHFTH----LMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILE-WKHMFLPLKWI 392

Query: 322 GLNAIALYV 330
           G+NA+ +YV
Sbjct: 393 GMNAMLVYV 401


>At5g47900.1 68418.m05917 hypothetical protein 
          Length = 384

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 1   MAIVFMIFVNDGAGGYWWMEHATWNGMVAGDLVFPAFLWIMGVCIPLSGKSAFAKGIPRW 60
           + + FMI V+D  G    + H+ W+G+   D V P FL+I+GV +  + K+   + +   
Sbjct: 155 LTVAFMILVDDVGGILPSINHSPWDGVTLADFVMPFFLFIVGVSLAFAYKNLSCRFVATR 214

Query: 61  KIVMHIVRRSIMMFFL------GMSLNTIYGSNVLQELRIFGVLQRLAV 103
           K ++  ++  ++  FL      G++ N  YG +V +++R+ G+LQ L V
Sbjct: 215 KALIRSLKLLLLGLFLQGGFIHGLN-NLTYGIDV-EKIRLMGILQNLKV 261



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 21/81 (25%)

Query: 180 PECSGGAAGFIDRLILGESHLYQRSD-ARNVY-------GGP-----------PTDPEGL 220
           P C+  A G +DR+ LG  HLY++   AR           GP           P DPEGL
Sbjct: 271 PGCN--AVGMLDRMFLGIQHLYRKPVYARTKQCSINYPNNGPLPPDAPSWCQAPFDPEGL 328

Query: 221 LGCVTSAVQALIGIQAGATVL 241
           L  + + V  L+G+  G  ++
Sbjct: 329 LSSLMATVTCLVGLHYGHIII 349


>At1g18600.1 68414.m02319 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 336

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 65  HIVRRSIMMFFLGMSLNTIYGSNVLQELRIFGVLQRLAVAYLVAAGFYALTAPK 118
           HIV   I ++F G S+   +G   L +L + G L   +V YL+   + A T+PK
Sbjct: 189 HIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGG-SVFYLIHHAYMAATSPK 241


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 195 LGESHLYQRSDARN---VYGGPP--TDPEGLLGCVTSAVQALIGIQAGATVLLQRSHKAR 249
           L +SH  + S++R    VYG  P  TD +G    +    ++ IG  AG T+   R H  +
Sbjct: 644 LPKSHKVESSNSRTSNYVYGATPPTTDSDGAGDMILFGSKSCIGNNAGRTLYHSREHYTQ 703

Query: 250 V 250
           V
Sbjct: 704 V 704


>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
           protease HTRA2, mitochondrial precursor (High
           temperature requirement protein A2) (HtrA2) (Omi
           stress-regulated endoprotease) (Serine proteinase OMI)
           (SP:O43464) {Homo sapiens}
          Length = 459

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 141 WVLAI--VLVTVHSVITFIIHHPDCPPGYLGPGGKHDEWVAPECS 183
           WV+A+   L   ++V   I+   D     LG GGKH E++  +CS
Sbjct: 261 WVIAVGCPLSLQNTVTAGIVSCVDRKSSDLGLGGKHREYLQTDCS 305


>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 76  LGMSLNTIYGSNVLQELRIFGVLQRLAVAYLVAAGFYALTAPKFYTPP-RGACGQALKDV 134
           LG++L+T+Y  N  + L   G+L   +   L+      L A +F  P  +G+     K +
Sbjct: 263 LGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCL 322

Query: 135 LSC-LWCWVLAIV 146
           ++  L C  ++I+
Sbjct: 323 IAALLGCGGMSII 335


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,139
Number of Sequences: 28952
Number of extensions: 387099
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 10
length of query: 381
length of database: 12,070,560
effective HSP length: 82
effective length of query: 299
effective length of database: 9,696,496
effective search space: 2899252304
effective search space used: 2899252304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)