GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.90 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    24   2.1  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   6.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   8.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 163 CPPGYLGP--GGKHDEWVAPECSGGAAGFID 191
           CPPG++GP   G  +E ++  CS   AG +D
Sbjct: 286 CPPGFVGPRCEGDINECLSNPCSN--AGTLD 314


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 135 LSCLWCWVLAIVLVTVHSVITFIIHHPDC 163
           L C++ +  A ++ TVH +    I+H  C
Sbjct: 143 LLCIYYFYCAFIIFTVHLLFLLCIYHFFC 171



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 134 VLSCLWCWVLAIVLVTVHSVITFIIHH 160
           +L C++ +  A +L TVH ++   I++
Sbjct: 234 ILLCIYYFYYAFILFTVHLLLLVCIYY 260



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 134 VLSCLWCWVLAIVLVTVHSVITFIIHH 160
           +L C++ +  A ++ TVH +    I++
Sbjct: 109 ILLCVYYFYYAFIIFTVHLLFLLCIYY 135


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 295 CCLLLLSFCYTLTDAWRIWNGGP 317
           C + + SF YT+ D    WN GP
Sbjct: 181 CHIEIESFGYTMRDIRYKWNEGP 203


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 301 SFCYTLTDAWRIWNGGP 317
           SF YT+ D    WN GP
Sbjct: 5   SFGYTMRDIRYKWNEGP 21


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 132 KDVLSCLWC 140
           K+VL C+WC
Sbjct: 375 KNVLKCVWC 383


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,187
Number of Sequences: 317
Number of extensions: 4196
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 381
length of database: 114,650
effective HSP length: 58
effective length of query: 323
effective length of database: 96,264
effective search space: 31093272
effective search space used: 31093272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)