GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK057293-1|BAB71412.1|  367|Homo sapiens protein ( Homo sapiens ...   219   1e-56

>AK057293-1|BAB71412.1|  367|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32731 fis, clone TESTI2001134. ).
          Length = 367

 Score =  219 bits (535), Expect = 1e-56
 Identities = 117/307 (38%), Positives = 169/307 (55%), Gaps = 7/307 (2%)

Query: 77  GMSLNTIYGSNVLQELRIFGVLQRLAVAYLVAAGF---YALTAPKFYTPPRGACGQALKD 133
           G +L +  G     ++RI GVLQRL V Y V A     +A   P+     R     +L+D
Sbjct: 60  GCNLGSPGGHVSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSCL--SLRD 117

Query: 134 VLSCLWCWVLAIVLVTVHSVITFIIHHPDCPPGYLGPGGKHDEWVAPECSGGAAGFIDRL 193
           + S    W+L +VL  +   +TF++  P CP GYLGPGG  D    P C+GGAAG+IDRL
Sbjct: 118 ITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGIGDFGKYPNCTGGAAGYIDRL 177

Query: 194 ILGESHLYQRSDARNVYGGPPT-DPEGLLGCVTSAVQALIGIQAGATVLLQRSH-KARVS 251
           +LG+ HLYQ   +  +Y      DPEG+LG + S V A +G+QAG  +L  ++  K  + 
Sbjct: 178 LLGDDHLYQHPSSAVLYHTEVAYDPEGILGTINSIVMAFLGVQAGKILLYYKARTKDILI 237

Query: 252 RXXXXXXXXXXXXXXXXXXSREHGVIPINKNLWSTSFVLVTSACCLLLLSFCYTLTDAWR 311
           R                  S   G IP+NKNLWS S+V   S+    +L   Y + D   
Sbjct: 238 RFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKG 297

Query: 312 IWNGGPFRSPGLNAIALYVGHSLCAHLFPFHWKIPNMETHTIKLLEAVWGTALWVIIAHV 371
           +W G PF  PG+N+I +YVGH +  + FPF WK+ + ++H   L + +  TALWV+IA++
Sbjct: 298 LWTGTPFFYPGMNSILVYVGHEVFENYFPFQWKLKDNQSHKEHLTQNIVATALWVLIAYI 357

Query: 372 MAKKKVF 378
           + +KK+F
Sbjct: 358 LYRKKIF 364


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,555,384
Number of Sequences: 224733
Number of extensions: 2917605
Number of successful extensions: 6376
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6372
Number of HSP's gapped (non-prelim): 1
length of query: 381
length of database: 73,234,838
effective HSP length: 91
effective length of query: 290
effective length of database: 52,784,135
effective search space: 15307399150
effective search space used: 15307399150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 66 (30.7 bits)