GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001270-TA|BGIBMGA001270-PA|undefined
         (381 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    31   1.8  
Z81109-13|CAB03254.2|  318|Caenorhabditis elegans Hypothetical p...    29   4.1  

>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 330 VGHSLCAHLFPFHWKIP 346
           V  S+CA +FPFHW+ P
Sbjct: 471 VAESVCALMFPFHWQCP 487


>Z81109-13|CAB03254.2|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.11 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 56  GIPRWKIVMHIVRR-SIMMFFLGMSLNTIYGSNVLQELRIFGVLQRLAVAYLVAAGFYAL 114
           GIP + IV+H     S+ +  L +   T   SN +++ + + +  ++ + +L     +AL
Sbjct: 4   GIPGYVIVLHSCTAISVPVNLLAIFCITTQSSNTMKQYKWYLLNVQIWI-FLTDIILFAL 62

Query: 115 TAPKFYTP 122
            AP+FY P
Sbjct: 63  IAPRFYFP 70


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,323
Number of Sequences: 27539
Number of extensions: 391861
Number of successful extensions: 1096
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 2
length of query: 381
length of database: 12,573,161
effective HSP length: 83
effective length of query: 298
effective length of database: 10,287,424
effective search space: 3065652352
effective search space used: 3065652352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)