Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001269-TA|BGIBMGA001269-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR008973|C2
calcium/lipid-binding region, CaLB, IPR001683|Phox-like
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    37   0.002
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.0  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 94   GVLSVLILHAQSLALTPQGAPPNPYVKVYLVPDPTKETKRKTRVLKRNSHPSFMEMLEYR 153
            G ++V ++ A  L         +P+V   L  +    TK   R L    +P+F E  E  
Sbjct: 1037 GEMTVDVIKATDLPAADSNGKSDPFVVFELQGEEVYRTKTHKRTL----NPTFNESFEVE 1092

Query: 154  LPIEAVKNRSLQATVWHYDSLQENQFLGGVVIPLSSLPLRQETVAWYPLE 203
            LP +   N    A V+ +D   ++  LG  VI    L  +Q+T    PL+
Sbjct: 1093 LPCKQTCN--FVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLD 1140



 Score = 33.1 bits (72), Expect = 0.030
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 94  GVLSVLILHAQSLALTPQGAPPNPYVKVYLVPDPTKETKRKTRVLKRNSHPSFMEMLEYR 153
           GVL   +   + L+  P   P   Y K+ +     KE    TR +K+N++PS+ E     
Sbjct: 571 GVLQFTVHQCKELSNDPSKRP-TAYAKLII---NNKEVYT-TRKIKKNNNPSWEESFGTL 625

Query: 154 LPIEAVKNRSLQATVWHYDSLQENQFLGGVVIPLSSLPLRQET-VAWYPLEYIP 206
           LP    KN +L   ++  +S  E+ F G   + L  L    +T + W+PL++ P
Sbjct: 626 LP--EGKNATLGVQIFTEES--EHPF-GTANVSLQDLFAATKTGLLWFPLQHAP 674


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 151 EYRLPIEAVKNRSLQATVWHYDSLQENQFLGGV-VIPLSSLPLRQETVAWYPLE 203
           ++    +  K +S Q  V  YD  ++++FLG V + P+      QE  AWY LE
Sbjct: 221 DFETVFDVTKMKS-QMVVSVYDKYEDDKFLGSVKITPIFLHEYVQE--AWYKLE 271


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 175 QENQFLGGVVIPLSSLPLRQETVA-WYP 201
           Q   FL  +V+PLS++P  QET+A W P
Sbjct: 438 QHGPFL--IVVPLSTVPAWQETLANWTP 463


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 122 YLVPDPTKETKRKTRVLKRNSHPSFMEMLEYRLPIEAVKNRSLQATVWHYDSLQENQFLG 181
           +  P P  ET      L   SH +F + L+ R+   A++ +  Q +   Y+ ++  Q L 
Sbjct: 801 FTTPVPVNETYTHNWPLLDTSHSTFEKSLQERMEQLAIERQEEQESEEEYEEVE--QSLM 858

Query: 182 GVVIPLSSL 190
            VV  +S L
Sbjct: 859 DVVDEMSDL 867


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)

Query: 175 QENQFLGGVVIPLSSLPLRQETVA 198
           Q   FL  VV+PLS++P  QET+A
Sbjct: 423 QHGPFL--VVVPLSTVPAWQETLA 444


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,921
Number of Sequences: 5004
Number of extensions: 32877
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 6
length of query: 207
length of database: 2,362,478
effective HSP length: 70
effective length of query: 137
effective length of database: 2,012,198
effective search space: 275671126
effective search space used: 275671126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)