GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001269-TA|BGIBMGA001269-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR008973|C2
calcium/lipid-binding region, CaLB, IPR001683|Phox-like
         (207 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.68 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 121 VYLVPDPTKETKRKTRVLKRNSHPSF--MEMLEYRLPIEAVK 160
           +YL P P   +     +  R SH S+  M+ +EY+  I   K
Sbjct: 139 LYLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYK 180


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 110 PQGAPPNPYVKVYLVPDP 127
           P+  PP P   VYL P P
Sbjct: 67  PEHKPPGPKDLVYLEPSP 84


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 110 PQGAPPNPYVKVYLVPDP 127
           P+  PP P   VYL P P
Sbjct: 68  PEHKPPGPKDLVYLEPSP 85


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 125 PDPTKETKRKTRVL 138
           PDP  ET +K RVL
Sbjct: 184 PDPHDETAKKPRVL 197


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 171 YDSLQENQFLGGVVIPLSSLP 191
           YD+   N+F G   IP   LP
Sbjct: 429 YDAYYGNRFSGEYEIPAHGLP 449


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,011
Number of Sequences: 429
Number of extensions: 2385
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 207
length of database: 140,377
effective HSP length: 55
effective length of query: 152
effective length of database: 116,782
effective search space: 17750864
effective search space used: 17750864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)