Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001267-TA|BGIBMGA001267-PA|IPR000569|HECT
         (910 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   5.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   7.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   7.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   7.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   7.1  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 452 NSQLND---PLAVELGVSVLDSRTPYLPFEDFYNEPLSDVIEMDKD 494
           N  LND   PL V L           +P +     PL +++E+++D
Sbjct: 32  NDYLNDKYKPLGVSLSNRFKQDAEETVPVKKISIPPLGEILELERD 77


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 110 SNSYEPSPSSTLGPNHKNTSENKENQNITTPEPSTASRGEPHTSHT 155
           S+   P P  T  P    T+E++  Q    P  S+ ++ +P T+ T
Sbjct: 388 SDEIPPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQ-KPQTTKT 432


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 100 VTPNKVSRTDSNSYEPSPSSTLGPNHKNTSENKENQN 136
           + P  +S + S S   SPSST    ++ ++EN    N
Sbjct: 317 IPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 353


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 100 VTPNKVSRTDSNSYEPSPSSTLGPNHKNTSENKENQN 136
           + P  +S + S S   SPSST    ++ ++EN    N
Sbjct: 106 IPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 142


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 100 VTPNKVSRTDSNSYEPSPSSTLGPNHKNTSENKENQN 136
           + P  +S + S S   SPSST    ++ ++EN    N
Sbjct: 106 IPPEPISASLSTSNSNSPSSTNLIQNEASNENSRESN 142


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,890
Number of Sequences: 317
Number of extensions: 9120
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 5
length of query: 910
length of database: 114,650
effective HSP length: 63
effective length of query: 847
effective length of database: 94,679
effective search space: 80193113
effective search space used: 80193113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)