GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001267-TA|BGIBMGA001267-PA|IPR000569|HECT
         (910 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.52 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   8.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 0.52
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 882 LLLPEYDTRDKLQDRLLKAINYSKGFGLH 910
           +L P  D+RD+L  R L+A+N      +H
Sbjct: 417 VLFPSLDSRDELHPRELEAVNLGSACRIH 445


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 667 FPMVVYRKLLGRKGSFEDLVDWNPILYNGLKDMLEYTGDDLEEVYY 712
           F  ++ R  L R+  + D +   PI  N  ++ L    D LEE +Y
Sbjct: 196 FQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFY 241


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 553 PEPFLRLRVRRSHLIEDALVVLEMISMER 581
           PE  + +  RRS LI D   V E +S ER
Sbjct: 371 PETIIDVSRRRSSLICDVYGVNESVSYER 399


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 433 PLESVLGHLYPPSSMKGARNSQLNDPLAVELGVSVLDSRTPYLPFEDFYNE 483
           PL   +  +      K  R+  L +  + +L  S  DSR P L   + YN+
Sbjct: 847 PLLGAIVPVLESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQ 897


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 433 PLESVLGHLYPPSSMKGARNSQLNDPLAVELGVSVLDSRTPYLPFEDFYNE 483
           PL   +  +      K  R+  L +  + +L  S  DSR P L   + YN+
Sbjct: 885 PLLGAIVPVLESIQQKAKRSKSLQEVSSDKLQESSTDSRNPALALAEPYNQ 935


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,314
Number of Sequences: 429
Number of extensions: 11015
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 6
length of query: 910
length of database: 140,377
effective HSP length: 64
effective length of query: 846
effective length of database: 112,921
effective search space: 95531166
effective search space used: 95531166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)