GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001266-TA|BGIBMGA001266-PA|IPR007875|Sprouty
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0698 - 5400401-5401015                                           29   2.8  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    29   3.7  

>01_01_0698 - 5400401-5401015
          Length = 204

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 95  CETCG---RCRCEQCARPRP-LPSRWLCGSCLCSAEACVD 130
           CE CG    C  E   R R     RW+CG C  +A A  D
Sbjct: 86  CECCGMQEECTPEYARRVRERYCGRWVCGLCAAAASAEAD 125


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 113 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 142
           PS W+C +  C A    D      C CC+  LF
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.137    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,113,461
Number of Sequences: 37544
Number of extensions: 157274
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)