GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001266-TA|BGIBMGA001266-PA|IPR007875|Sprouty
         (213 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    29   1.9  
U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    27   7.7  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    27   7.7  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 91  DSIVCETCGRCRCEQC-ARPRPLPSRWLCGS-CLCSAEACVDYASCMC 136
           +S +CE  G C C +C   PR  P   + G  C C    C  +   +C
Sbjct: 531 ESAICEGRGVCNCGRCECNPRANPEEQISGEFCECDNFNCPRHDRKIC 578



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 98  CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 137
           CGRCRC          S   C  C      CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 91  DSIVCETCGRCRCEQC-ARPRPLPSRWLCGS-CLCSAEACVDYASCMC 136
           +S +CE  G C C +C   PR  P   + G  C C    C  +   +C
Sbjct: 531 ESAICEGRGVCNCGRCECNPRANPEEQISGEFCECDNFNCPRHDRKIC 578



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 98  CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 137
           CGRCRC          S   C  C      CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663


>U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical
           protein C05D9.3 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 92  SIVCETCGRCRCEQCARPRPLPSRWLC----GSC-------LCSAEACVDYASCMC 136
           S VC   G+C+C QC   +P  +   C     SC       +CS     D   C C
Sbjct: 277 SPVCSASGKCKCGQCQCNKPTVTGKFCQCDNDSCPLAVNGKVCSGNGVCDCGVCKC 332


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
            protein H20J04.2 protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 91   DSIVCETCGRCRCEQCAR---PRPLPSRWLCGSC 121
            D ++C  C  C   +CA+       P+ W+C SC
Sbjct: 1126 DLVLCSECDNCYHLKCAKLDVNSDAPADWMCTSC 1159


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 98  CGRCRCE-QCARP-----RPLPSRWLCGSCLCSAEACVDY 131
           CG C  + +CARP     R +P  WL  S LC      D+
Sbjct: 844 CGWCSLDSKCARPHQCSNRQIPENWLNASQLCPNPVIEDF 883


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 98  CGRCRCE-QCARP-----RPLPSRWLCGSCLCSAEACVDY 131
           CG C  + +CARP     R +P  WL  S LC      D+
Sbjct: 850 CGWCSLDSKCARPHQCSNRQIPENWLNASQLCPNPVIEDF 889


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.137    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,890,075
Number of Sequences: 27539
Number of extensions: 124068
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 13
length of query: 213
length of database: 12,573,161
effective HSP length: 78
effective length of query: 135
effective length of database: 10,425,119
effective search space: 1407391065
effective search space used: 1407391065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)