GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001266-TA|BGIBMGA001266-PA|IPR007875|Sprouty
         (213 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             29   2.4  
At5g54150.1 68418.m06743 expressed protein similar to unknown pr...    27   9.5  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    27   9.5  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 91  DSIVCETCGRCRCE-QCARPR-PLPSRWL---CGSCLCSAEACVDYASCMCCVK 139
           +S  C   G CR    C +PR P PS      CG C C   +C     C  C K
Sbjct: 291 ESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCK 344


>At5g54150.1 68418.m06743 expressed protein similar to unknown
           protein (pir||T05871)
          Length = 198

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 92  SIVCETCGRCRCEQCARPRPLPSRWLCGSCLCSA 125
           SI+ ET G+C C  C +P P  + W   +  C+A
Sbjct: 156 SIIHET-GQCYCYVCDKPAPC-AEWTISTSHCNA 187


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 93  IVCETCGRCRCEQCARPRPLPS-RWLCGSCLC 123
           I C+ C     + C   + LP   W C SC C
Sbjct: 739 ICCDNCPSTFHQACLSMQVLPEGSWYCSSCTC 770


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.137    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,997
Number of Sequences: 28952
Number of extensions: 103222
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 12,070,560
effective HSP length: 78
effective length of query: 135
effective length of database: 9,812,304
effective search space: 1324661040
effective search space used: 1324661040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)