Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001265-TA|BGIBMGA001265-PA|IPR009000|Translation factor,
IPR000178|Initiation factor 2, IPR000795|Protein synthesis factor,
GTP-binding, IPR005225|Small GTP-binding protein domain,
IPR004161|Elongation factor Tu, domain 2
         (1143 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   5.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   5.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   5.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   5.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   9.0  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/88 (20%), Positives = 31/88 (35%)

Query: 412 KKPPRPGTRVKPGKLKSQMSQDAPLTPMEEKKVELEIVDAKQEELQKVDSEKKESEVDLV 471
           K PP     V+   L           P  +   +   VD + E L+   +E  ++  D  
Sbjct: 57  KNPPNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNENSKNGDDDE 116

Query: 472 KDSWDAESSEDETEPETKQESVTPKSQT 499
              W A+ SE+      +  +   K+ T
Sbjct: 117 GHEWQADVSEEAVRARMQDLTEGAKNMT 144


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 448 IVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDETEPETKQESV 493
           IV+  + E  +   +KK S+VD   +  D+++++D    E K+  +
Sbjct: 434 IVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKKPHI 479


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 448 IVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDETEPETKQESV 493
           IV+  + E  +   +KK S+VD   +  D+++++D    E K+  +
Sbjct: 326 IVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGNNGEKKKPHI 371


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 450 DAKQEELQKVDSEKKESEVDLVKDSWDAESSE 481
           D K E+L ++  EK +   + + +  DA S++
Sbjct: 521 DVKTEDLDEIQKEKGDEYYETISNHTDASSAK 552


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 450 DAKQEELQKVDSEKKESEVDLVKDSWDAESSE 481
           D K E+L ++  EK +   + + +  DA S++
Sbjct: 521 DVKTEDLDEIQKEKGDEYYETISNHTDASSAK 552


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 450 DAKQEELQKVDSEKKESEVDLVKDSWDAESSE 481
           D K E+L ++  EK +   + + +  DA S++
Sbjct: 521 DVKTEDLDEIQKEKGDEYYETISNHTDASSAK 552


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 450 DAKQEELQKVDSEKKESEVDLVKDSWDAESSE 481
           D K E+L ++  EK +   + + +  DA S++
Sbjct: 521 DVKTEDLDEIQKEKGDEYYETISNHTDASSAK 552


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 456 LQKVDSEKKESEVDLVKDSWDAESSEDETE 485
           L K +SEKK   +  +K+  D +SSE   E
Sbjct: 404 LSKRNSEKKCGSLREIKEVSDCDSSESRKE 433


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,535
Number of Sequences: 317
Number of extensions: 6446
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 1143
length of database: 114,650
effective HSP length: 64
effective length of query: 1079
effective length of database: 94,362
effective search space: 101816598
effective search space used: 101816598
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)