Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001265-TA|BGIBMGA001265-PA|IPR009000|Translation factor,
IPR000178|Initiation factor 2, IPR000795|Protein synthesis factor,
GTP-binding, IPR005225|Small GTP-binding protein domain,
IPR004161|Elongation factor Tu, domain 2
(1143 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 104 4e-24
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 30 0.12
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 30 0.12
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 30 0.12
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 30 0.12
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 26 2.0
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 24 8.1
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 104 bits (250), Expect = 4e-24
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 20/150 (13%)
Query: 545 KRLEKRRQDNEANRVNNPLRAAVVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGA 604
K + KR NE+ + R +V ++GHVD GKT +LD LR T++ E GGITQ IGA
Sbjct: 128 KDITKRPLPNESQLIK---RHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGA 184
Query: 605 TNVPIENIKEQTKHVKGVSEIAFKLPGLLIIDTPGHESFSNLRSRGSSLCDIAILVVDIM 664
+V +E+ + T +DTPGH +F ++R RG+ + DI +LVV
Sbjct: 185 FDVTLESGERVT-----------------FLDTPGHAAFISMRHRGAHITDIVVLVVAAD 227
Query: 665 HGLEQQTIESINLLKQKKTPFLVALNKIDR 694
G+++QT++SI + K K P +VA+NKID+
Sbjct: 228 DGVKEQTLQSIEMAKDAKVPIIVAINKIDK 257
Score = 29.5 bits (63), Expect = 0.16
Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 12/212 (5%)
Query: 890 VDVLKEEVAKELKSALSSIKLSERGVYVQASTLGSLEALLEFLKASKIPYSAIRIGPVVK 949
+D+++E++ +E + + + V+ GS+EALL+ Y I +V
Sbjct: 456 MDMVREKIIEEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIFDT--YTYDTICQLNIVH 513
Query: 950 RDV--MKASAMLEHDSQYATILAFDVKIERDAQELADQLGVKIFAADIIYHLFDKFTAYR 1007
+ + S + ++ A I F+V + ++ A++ GV + +++Y L D +
Sbjct: 514 YGIGFITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNI---K 570
Query: 1008 EELKQKKREEFKHIAVFPCKLKILPQFVFNSRDP--IVAGIMVEAGV-VKEGTPICVPSK 1064
+E+ E + + K+L F ++ VAG G+ +K G +
Sbjct: 571 KEIYDILPE--VDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHVLRGN 628
Query: 1065 EFVESGIVTSIEVNHKQVETARKGQEVCIKIE 1096
E + SG + S+ ++V + E ++ E
Sbjct: 629 ENIYSGKLISMRHLKEEVSSIETNYECGLRFE 660
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
IID PGH F G+S D A+L+V
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLIV 116
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
IID PGH F G+S D A+L+V
Sbjct: 16 IIDAPGHRDFIKNMITGTSQADCAVLIV 43
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
IID PGH F G+S D A+L+V
Sbjct: 32 IIDAPGHRDFIKNMITGTSQADCAVLIV 59
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
IID PGH F G+S D A+L+V
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLIV 116
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 748 PRTYVSLVPTSAVTGEGMGNLLAMI 772
P YVS P+SA+TG + ++L I
Sbjct: 100 PTVYVSNEPSSAITGNNVKDVLVSI 124
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding protein
ASP6 protein.
Length = 146
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 442 KKVELEIVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDE 483
KK+ +E + L+KV S+K ++ +L+ + E +DE
Sbjct: 25 KKMTIEEAKKTIKNLRKVCSKKNDTPKELLDGQFRGEFPQDE 66
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.311 0.130 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,075
Number of Sequences: 429
Number of extensions: 8505
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 1143
length of database: 140,377
effective HSP length: 65
effective length of query: 1078
effective length of database: 112,492
effective search space: 121266376
effective search space used: 121266376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)
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