GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001265-TA|BGIBMGA001265-PA|IPR009000|Translation factor,
IPR000178|Initiation factor 2, IPR000795|Protein synthesis factor,
GTP-binding, IPR005225|Small GTP-binding protein domain,
IPR004161|Elongation factor Tu, domain 2
         (1143 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    29   0.92 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   1.2  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    27   2.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   2.1  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    27   3.7  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    25   8.5  

>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 386 QKAEKARAQALLESLKARGVEIGSTEK--KPPRPGTRVKPGKLKSQMSQDAPLTPMEEKK 443
           QKAEK R   +    KA+G    + E+  K       ++ G  K+ + +  P   +E +K
Sbjct: 283 QKAEKRRLFEIASLFKAKGHRFAAIEQLLKWAHQYAPMRGG--KAHLEEILPTLALETEK 340

Query: 444 VELEIVDAKQEELQKVDSEKKESEVDLVKDSWDAES 479
           +   +    +   + V  +K E +    KD W+  +
Sbjct: 341 LRRTVEQTGKSSAELVRLKKLEEKFVSKKDRWNTNT 376


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 383 TPKQKAEKARAQALLESLKARGVEIGSTEKKPPRPGTRVKPGKLKSQMSQDAPLTPMEEK 442
           T K++A K   Q  + +L+ R VE+  T  +     T +K    + +   ++    ++ K
Sbjct: 833 TAKEQAVKLEEQ--IAALQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAK 890

Query: 443 KVELEIVDAKQEELQKVDSEKKESEVDLV----KDSWDAESSEDETEP 486
             + + +  + +EL K++ +KKE+E+  V    KD +D  S  ++  P
Sbjct: 891 YHQRDKLLKQNDEL-KLEIKKKENEITKVRNENKDGYDRISGMEQKYP 937



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 388 AEKARAQALLESLKARGVEIGSTEKKPPRPGTRVKPGKLKSQ----------MSQDAPLT 437
           AE  R QA+L+  +A   +I +   K  +   R   G+LK Q          + Q    T
Sbjct: 677 AEINRIQAMLQEKEAELRDISAEVSKIEKTAHRF--GQLKEQHDMLNYELNNLKQRLAQT 734

Query: 438 PMEEKKVELEIVDAKQEELQKVDSEKKESE 467
             ++ K E+E ++ K E LQK   E +E++
Sbjct: 735 SFQQTKEEIEELNKKIETLQKTIVEARETQ 764


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
            methoprene-tolerant protein protein.
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 1055 EGTPICV--PSKEFVESGIVTSIEVNHKQVETARKGQ 1089
            EG P+ +  P K  V+S IV SI V     +T R+G+
Sbjct: 698  EGAPLAIVAPEKNSVKSAIVKSINVVSIAAKTMREGR 734


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 442 KKVELEIVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDETEPE 487
           K+ EL I++ ++EE  +V  EKK+    + ++    E    E E E
Sbjct: 255 KQQELNIIEKRKEEADEVLKEKKKEVGKMTREMAKKEQEIREVEAE 300


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 428 SQMSQDAPLTPMEEKKVELEIVDAKQEELQKVD----SEKKESEVDL 470
           SQ S D  L P++E+ +  E   +  EE+   D     EK E+E D+
Sbjct: 42  SQKSSDGSLDPLDEEDIRTEQPTSCVEEVLPTDPLELHEKLENETDI 88


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 429 QMSQDAPLTPMEEKKVELEIVDAKQEELQKVDSEK-KESEVDLVKDSWDAESSEDETEP- 486
           ++ +DAP    E+   + E ++ +QEE  + D E+  ESE +  ++S + E +    E  
Sbjct: 60  ELPEDAPEPVPEDGSPDEEHLEEEQEEEAEADEEEADESESEESEESDELEEARLVAEEL 119

Query: 487 ETKQESV 493
           E +Q+ +
Sbjct: 120 EERQQEL 126


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.311    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,351
Number of Sequences: 2123
Number of extensions: 27258
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 9
length of query: 1143
length of database: 516,269
effective HSP length: 72
effective length of query: 1071
effective length of database: 363,413
effective search space: 389215323
effective search space used: 389215323
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)