GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001265-TA|BGIBMGA001265-PA|IPR009000|Translation factor,
IPR000178|Initiation factor 2, IPR000795|Protein synthesis factor,
GTP-binding, IPR005225|Small GTP-binding protein domain,
IPR004161|Elongation factor Tu, domain 2
         (1143 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...   104   4e-24
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    30   0.12 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    30   0.12 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    30   0.12 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    30   0.12 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   2.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score =  104 bits (250), Expect = 4e-24
 Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 20/150 (13%)

Query: 545 KRLEKRRQDNEANRVNNPLRAAVVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGA 604
           K + KR   NE+  +    R  +V ++GHVD GKT +LD LR T++   E GGITQ IGA
Sbjct: 128 KDITKRPLPNESQLIK---RHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGA 184

Query: 605 TNVPIENIKEQTKHVKGVSEIAFKLPGLLIIDTPGHESFSNLRSRGSSLCDIAILVVDIM 664
            +V +E+ +  T                  +DTPGH +F ++R RG+ + DI +LVV   
Sbjct: 185 FDVTLESGERVT-----------------FLDTPGHAAFISMRHRGAHITDIVVLVVAAD 227

Query: 665 HGLEQQTIESINLLKQKKTPFLVALNKIDR 694
            G+++QT++SI + K  K P +VA+NKID+
Sbjct: 228 DGVKEQTLQSIEMAKDAKVPIIVAINKIDK 257



 Score = 29.5 bits (63), Expect = 0.16
 Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 12/212 (5%)

Query: 890  VDVLKEEVAKELKSALSSIKLSERGVYVQASTLGSLEALLEFLKASKIPYSAIRIGPVVK 949
            +D+++E++ +E +   +        + V+    GS+EALL+        Y  I    +V 
Sbjct: 456  MDMVREKIIEEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIFDT--YTYDTICQLNIVH 513

Query: 950  RDV--MKASAMLEHDSQYATILAFDVKIERDAQELADQLGVKIFAADIIYHLFDKFTAYR 1007
              +  +  S +   ++  A I  F+V   +  ++ A++ GV +   +++Y L D     +
Sbjct: 514  YGIGFITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNI---K 570

Query: 1008 EELKQKKREEFKHIAVFPCKLKILPQFVFNSRDP--IVAGIMVEAGV-VKEGTPICVPSK 1064
            +E+     E    +     + K+L  F    ++    VAG     G+ +K G    +   
Sbjct: 571  KEIYDILPE--VDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHVLRGN 628

Query: 1065 EFVESGIVTSIEVNHKQVETARKGQEVCIKIE 1096
            E + SG + S+    ++V +     E  ++ E
Sbjct: 629  ENIYSGKLISMRHLKEEVSSIETNYECGLRFE 660


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
           IID PGH  F      G+S  D A+L+V
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIV 116


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
           IID PGH  F      G+S  D A+L+V
Sbjct: 16  IIDAPGHRDFIKNMITGTSQADCAVLIV 43


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
           IID PGH  F      G+S  D A+L+V
Sbjct: 32  IIDAPGHRDFIKNMITGTSQADCAVLIV 59


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 634 IIDTPGHESFSNLRSRGSSLCDIAILVV 661
           IID PGH  F      G+S  D A+L+V
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIV 116


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 748 PRTYVSLVPTSAVTGEGMGNLLAMI 772
           P  YVS  P+SA+TG  + ++L  I
Sbjct: 100 PTVYVSNEPSSAITGNNVKDVLVSI 124


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 442 KKVELEIVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDE 483
           KK+ +E      + L+KV S+K ++  +L+   +  E  +DE
Sbjct: 25  KKMTIEEAKKTIKNLRKVCSKKNDTPKELLDGQFRGEFPQDE 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,075
Number of Sequences: 429
Number of extensions: 8505
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 1143
length of database: 140,377
effective HSP length: 65
effective length of query: 1078
effective length of database: 112,492
effective search space: 121266376
effective search space used: 121266376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)