Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001264-TA|BGIBMGA001264-PA|IPR009072|Histone-fold
         (254 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)                  31   0.92 
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/85 (28%), Positives = 40/85 (47%)

Query: 133 EIFLPDHALVVGRFMLAAWELGLEGXXXXXXXXXXXXXQNFLKNVISAVLAQRKGYKTHG 192
           ++ LPD   + GR  L AW+ GL+              ++ +K++++   A+R  Y+   
Sbjct: 560 DLMLPDITTLHGRLFLGAWDAGLDNVADETVPLIQCATEHLVKDILTICCARRSPYRLRD 619

Query: 193 KYFMYDIGGDMPNMWLRNSAKLYDP 217
            +F Y  G   P M LRNS   + P
Sbjct: 620 GHFRYASGTACPKMHLRNSNLTWPP 644



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 38  KEEFDGEARKLLSNDQVHFHNEFLLALLNKVEGLAET 74
           K++FD   R+ L  D +HFHN FLLA+L K + L  T
Sbjct: 509 KDDFDARTRQCLGTDNIHFHNTFLLAILAKCQALGAT 545


>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
          Length = 940

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 208 LRNSAKLYDPQSWGRVNVDDGVDSLGPRCPPT 239
           L  S+K + P+S    N+DDG  +L P C PT
Sbjct: 598 LNPSSKEFYPRSLSLTNLDDGTTTLQPPCLPT 629


>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 27  QMKLWFRMKLTKEEFDGEARKL-LSNDQVHFHNEFLLALLNKVEGLAETS 75
           Q+K+W R +L  +E       L  S +Q+ ++N+FLL  +N    +  TS
Sbjct: 847 QIKVWNRCQLMTDECTDPYLPLERSFEQLKYYNKFLLRFMNLTIAIIRTS 896


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,483,714
Number of Sequences: 59808
Number of extensions: 262190
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 4
length of query: 254
length of database: 16,821,457
effective HSP length: 81
effective length of query: 173
effective length of database: 11,977,009
effective search space: 2072022557
effective search space used: 2072022557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)