Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001264-TA|BGIBMGA001264-PA|IPR009072|Histone-fold
         (254 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015401-1|AAH15401.1|  335|Homo sapiens transcriptional adaptor...   109   1e-23
AL009182-1|CAI22772.1|  335|Homo sapiens transcriptional adaptor...   109   1e-23
AL008639-1|CAI23577.1|  335|Homo sapiens transcriptional adaptor...   109   1e-23

>BC015401-1|AAH15401.1|  335|Homo sapiens transcriptional adaptor 1
           (HFI1 homolog, yeast)-like protein.
          Length = 335

 Score =  109 bits (261), Expect = 1e-23
 Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 6   LNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 65
           L  A++ L+E LG+   +Y+  +KLWF+ K++KEEFD EA +LL+ D VH HN+FLLA+L
Sbjct: 8   LEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAIL 67

Query: 66  NKVEGLAETSITIAQ------EKAXXXXXXXXXXXXXXXXXXXXNFEPVDILEYLPP-NS 118
            + + L  T              A                     F+P + L       +
Sbjct: 68  TRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVA 127

Query: 119 PPGAGSDGVKYATQEIFLPDHALVVGRFMLAAWELGLEGXXXXXXXXXXXXXQNFLKNVI 178
                 D +K  +  + LP    + GR ++ A+E GL+              +N LK+++
Sbjct: 128 KDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDIL 187

Query: 179 SAVLAQRKGYKTHGKYFMYDIGGDM-PNMWLRNSAKLYDPQSWGRVNVDDGVDSLGPRCP 237
           ++V+++RK Y+    +F Y  G ++ P  +L+NS   Y+                 P   
Sbjct: 188 TSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASH 247

Query: 238 PTIDEMEHSAVFEIAC 253
           P  D+ E  A   +AC
Sbjct: 248 PPPDDAEQQAALLLAC 263


>AL009182-1|CAI22772.1|  335|Homo sapiens transcriptional adaptor 1
           (HFI1 homolog, yeast)-like protein.
          Length = 335

 Score =  109 bits (261), Expect = 1e-23
 Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 6   LNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 65
           L  A++ L+E LG+   +Y+  +KLWF+ K++KEEFD EA +LL+ D VH HN+FLLA+L
Sbjct: 8   LEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAIL 67

Query: 66  NKVEGLAETSITIAQ------EKAXXXXXXXXXXXXXXXXXXXXNFEPVDILEYLPP-NS 118
            + + L  T              A                     F+P + L       +
Sbjct: 68  TRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVA 127

Query: 119 PPGAGSDGVKYATQEIFLPDHALVVGRFMLAAWELGLEGXXXXXXXXXXXXXQNFLKNVI 178
                 D +K  +  + LP    + GR ++ A+E GL+              +N LK+++
Sbjct: 128 KDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDIL 187

Query: 179 SAVLAQRKGYKTHGKYFMYDIGGDM-PNMWLRNSAKLYDPQSWGRVNVDDGVDSLGPRCP 237
           ++V+++RK Y+    +F Y  G ++ P  +L+NS   Y+                 P   
Sbjct: 188 TSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASH 247

Query: 238 PTIDEMEHSAVFEIAC 253
           P  D+ E  A   +AC
Sbjct: 248 PPPDDAEQQAALLLAC 263


>AL008639-1|CAI23577.1|  335|Homo sapiens transcriptional adaptor 1
           (HFI1 homolog, yeast)-like protein.
          Length = 335

 Score =  109 bits (261), Expect = 1e-23
 Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 6   LNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 65
           L  A++ L+E LG+   +Y+  +KLWF+ K++KEEFD EA +LL+ D VH HN+FLLA+L
Sbjct: 8   LEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAIL 67

Query: 66  NKVEGLAETSITIAQ------EKAXXXXXXXXXXXXXXXXXXXXNFEPVDILEYLPP-NS 118
            + + L  T              A                     F+P + L       +
Sbjct: 68  TRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKLSSVRQKFDHRFQPQNPLSGAQQFVA 127

Query: 119 PPGAGSDGVKYATQEIFLPDHALVVGRFMLAAWELGLEGXXXXXXXXXXXXXQNFLKNVI 178
                 D +K  +  + LP    + GR ++ A+E GL+              +N LK+++
Sbjct: 128 KDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDIL 187

Query: 179 SAVLAQRKGYKTHGKYFMYDIGGDM-PNMWLRNSAKLYDPQSWGRVNVDDGVDSLGPRCP 237
           ++V+++RK Y+    +F Y  G ++ P  +L+NS   Y+                 P   
Sbjct: 188 TSVVSRRKAYRLRDGHFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASH 247

Query: 238 PTIDEMEHSAVFEIAC 253
           P  D+ E  A   +AC
Sbjct: 248 PPPDDAEQQAALLLAC 263


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,997,306
Number of Sequences: 224733
Number of extensions: 1234550
Number of successful extensions: 2486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 6
length of query: 254
length of database: 73,234,838
effective HSP length: 88
effective length of query: 166
effective length of database: 53,458,334
effective search space: 8874083444
effective search space used: 8874083444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)