GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001264-TA|BGIBMGA001264-PA|IPR009072|Histone-fold
         (254 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.3  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 27  QMKLWFRMKLTKEEFDGEARKLLSNDQVH--FHNEFL 61
           Q+K+WF+ +  KE    + +++    Q+   FHN F+
Sbjct: 200 QIKIWFQNRRAKERKQNK-KRIEEKSQIDNLFHNGFM 235


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 176 NVISAVLAQRKGYKTHGKYFMYDIGGDMPNMWLR 209
           N +SAV  Q +GY T+    +    G+ P + L+
Sbjct: 380 NNVSAVTTQHQGYPTNTVTILGPNSGNTPKILLQ 413


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,972
Number of Sequences: 317
Number of extensions: 2024
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 254
length of database: 114,650
effective HSP length: 55
effective length of query: 199
effective length of database: 97,215
effective search space: 19345785
effective search space used: 19345785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)