GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001264-TA|BGIBMGA001264-PA|IPR009072|Histone-fold
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    39   0.005
02_01_0231 - 1537788-1537804,1537963-1538173                           34   0.097
04_04_1437 + 33600282-33601562                                         34   0.13 
03_06_0058 - 31330067-31330978                                         32   0.52 
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992...    31   0.69 
04_03_0372 + 15068405-15070000                                         29   3.7  
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    28   6.4  

>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 4   DTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLA 63
           DT+ I  +   ++  E+S  YF+ +K +   +L KEEFD      +  D + +HN  + +
Sbjct: 289 DTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFLIRS 348

Query: 64  LLN 66
           +L+
Sbjct: 349 ILS 351


>02_01_0231 - 1537788-1537804,1537963-1538173
          Length = 75

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 19 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 65
          E+S +YF  +K++   ++ K  FD    + +  + +  HN  L+++L
Sbjct: 14 ERSERYFRYLKMFLGSRMEKSMFDRVVIQTIGRENIRLHNHLLMSVL 60


>04_04_1437 + 33600282-33601562
          Length = 426

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 6  LNIARRKLNEVLG-EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLAL 64
          L   + +L + LG ++S +YF+ +K +   +L+K +FD    + L  + +  HN+ + ++
Sbjct: 37 LREVKLQLEKRLGPDRSRRYFSYLKGYLSNRLSKADFDKVCLQTLGRENLRVHNQLIRSV 96

Query: 65 L 65
          L
Sbjct: 97 L 97


>03_06_0058 - 31330067-31330978
          Length = 303

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 4  DTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLA 63
          D   + +R +  +  +++ +YF  +     +KLTK EFD      +  + +  HN  +  
Sbjct: 11 DIAELKQRLVKRLGRQRAGQYFAHLTRLLNLKLTKVEFDKLCYATIGRENIALHNALIRG 70

Query: 64 LL-NKVEGLAETS 75
          ++ N + G+   S
Sbjct: 71 IISNALSGVPPPS 83


>04_03_0178 +
          12298502-12298878,12298896-12298998,12299211-12299271,
          12299423-12299486,12299825-12299996,12300765-12300863
          Length = 291

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 20 KSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 66
          ++ KYF  ++ +   KL K EFD      L  + +  HN  + ++L+
Sbjct: 46 RAKKYFQHLERFLSSKLNKNEFDKLCLVTLGRENLPLHNHLIRSILH 92


>04_03_0372 + 15068405-15070000
          Length = 531

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 107 PVDILEYLPPNSPPGAGSDGVKYATQEIFLPD 138
           P + ++ LPP  PP  G  G K+  + +FLP+
Sbjct: 164 PRESVQLLPPLPPPPGGGAG-KHVVERVFLPE 194


>04_04_0179 -
           23342764-23342973,23343185-23343340,23343535-23343593,
           23344150-23344226,23344309-23344587,23344800-23344885,
           23344960-23345027,23345721-23345904,23346071-23346204,
           23346776-23347039,23347613-23347677,23347833-23348407,
           23348501-23348680,23348765-23348928,23349008-23349261,
           23349405-23349562,23349808-23349948,23350176-23350282,
           23350651-23350737,23350812-23350901,23350974-23351055,
           23351370-23351561,23351748-23351816,23351959-23352294,
           23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 19  EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEF 60
           EK    FN+MKL  +++ T+ +++ + R+L S  + H HN +
Sbjct: 324 EKLKVSFNEMKL--QVESTRSQWEEDLRRLESYFEAHNHNAY 363


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,950,365
Number of Sequences: 37544
Number of extensions: 254293
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 7
length of query: 254
length of database: 14,793,348
effective HSP length: 80
effective length of query: 174
effective length of database: 11,789,828
effective search space: 2051430072
effective search space used: 2051430072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)