GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001264-TA|BGIBMGA001264-PA|IPR009072|Histone-fold
         (254 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33890.2 68417.m04809 expressed protein                             49   4e-06
At4g33890.1 68417.m04808 expressed protein                             49   4e-06
At4g31440.1 68417.m04468 hypothetical protein                          42   5e-04
At2g14850.1 68415.m01687 expressed protein                             32   0.43 
At3g57350.1 68416.m06384 nucleoporin interacting component-relat...    31   0.57 
At2g41620.1 68415.m05143 nucleoporin interacting component famil...    31   1.00 
At5g67410.1 68418.m08500 hypothetical protein                          29   3.1  
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    29   4.0  

>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 4  DTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLA 63
          DTL I      E+  +++  YFNQ+  +F +K+TK EFD    K +    +H HN  + +
Sbjct: 11 DTLEIKALIYREIGNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLIRS 70

Query: 64 LL 65
          ++
Sbjct: 71 II 72


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 4  DTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLA 63
          DTL I      E+  +++  YFNQ+  +F +K+TK EFD    K +    +H HN  + +
Sbjct: 11 DTLEIKALIYREIGNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLIRS 70

Query: 64 LL 65
          ++
Sbjct: 71 II 72


>At4g31440.1 68417.m04468 hypothetical protein
          Length = 379

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 19 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLNKVEGLAETSITI 78
          E+ST+YF  +  +   KLTK EFD    +LL  + +  HN+ + ++L     LA++  ++
Sbjct: 25 ERSTRYFYYLGRFLSQKLTKSEFDKSCFRLLGRENLSLHNKLIRSILRNA-SLAKSPPSV 83

Query: 79 AQ 80
           Q
Sbjct: 84 HQ 85


>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 11/47 (23%), Positives = 26/47 (55%)

Query: 19 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 65
          +++  YF+Q+  +   +++K EFD    K +  + +  HN  + ++L
Sbjct: 26 QRADTYFDQLGKFLTSRISKSEFDKLCSKTVGRENISLHNRLVRSIL 72


>At3g57350.1 68416.m06384 nucleoporin interacting component-related
           contains weak hit to Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 875

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 9   ARRKLNEVLGEKSTKYFNQMK--LWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 66
           +RR+++ ++ + ST  FN ++  LWF++   ++   G +  ++++  V +  + L A LN
Sbjct: 430 SRRQIDRIMRDFST-LFNTIEDFLWFKLSCVRDVAGGSSSMIVNDGLVPYSLDDLQAYLN 488

Query: 67  KVE 69
           K E
Sbjct: 489 KFE 491


>At2g41620.1 68415.m05143 nucleoporin interacting component family
           protein contains Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 861

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 9   ARRKLNEVLGEKSTKYFNQMK--LWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 66
           +RR++  +L + ST  FN ++  LWF++   ++   G +  +L++    +  + L A LN
Sbjct: 429 SRRQIERILRDLST-LFNTIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQAYLN 487

Query: 67  KVE 69
           K E
Sbjct: 488 KFE 490


>At5g67410.1 68418.m08500 hypothetical protein
          Length = 287

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 20 KSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLNKV 68
          K+  Y N +  +  +K++K +FD      +  + +  HN  L  +L  +
Sbjct: 28 KTESYLNLLSKFLSLKISKSDFDKLIIVTVKRENISLHNALLRGILKNI 76


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 9   ARRKLNEVLGEKSTKYFNQMKLWFRMK-LTKEEFDGEARKLLSNDQVHFHNEFLLALLNK 67
           A RKL+ VL E    + +Q   W+  + +   + +G+ R+    D+    N +L  +   
Sbjct: 150 ALRKLDSVLLETLDNFKDQKDFWYVPRDMEDADHNGDWRR----DE----NWWLPVVKVP 201

Query: 68  VEGLAETSITIAQEKAXXXXXXXXXXXXXXXXXXXXNFEPVDILEYLPPNSPPGAGSDGV 127
            +GL+E S    Q +                        P + ++ LP N     G    
Sbjct: 202 TDGLSEESRRWLQNQKDSVAQVLKAATAINAHVLSEMHVPENYIDSLPKNGKTSLGDFLY 261

Query: 128 KYATQEIFLPDH 139
           K  T+E F PD+
Sbjct: 262 KSITEESFDPDY 273


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,495,394
Number of Sequences: 28952
Number of extensions: 197880
Number of successful extensions: 427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 8
length of query: 254
length of database: 12,070,560
effective HSP length: 79
effective length of query: 175
effective length of database: 9,783,352
effective search space: 1712086600
effective search space used: 1712086600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)