Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001263-TA|BGIBMGA001263-PA|IPR002559|Transposase, IS4
         (294 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 205 IVKTCCALHNWLRQTKLQNRQYEYTVDSEH 234
           I+  C  L  W+R T  Q      T+D E+
Sbjct: 51  ILPVCNGLWRWIRLTYGQTNHISLTLDLEY 80


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 205 IVKTCCALHNWLRQTKLQNRQYEYTVDSEH 234
           I+  C  L  W+R T  Q      T+D E+
Sbjct: 89  ILPVCNGLWRWIRLTYGQTNHISLTLDLEY 118


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 55 NFPGCCGAIDGKH 67
          +F GCCGAI   H
Sbjct: 66 SFFGCCGAIRESH 78


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,798
Number of Sequences: 429
Number of extensions: 3807
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 294
length of database: 140,377
effective HSP length: 57
effective length of query: 237
effective length of database: 115,924
effective search space: 27473988
effective search space used: 27473988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)