GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001263-TA|BGIBMGA001263-PA|IPR002559|Transposase, IS4
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    31   0.20 
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    28   1.8  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   4.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   7.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.8  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 153 PFPGNRLTLQQ-KIFNYRLSRARRIVENAF-GILAARFRVFEKPM 195
           PF   ++TL+Q K  + RL    +I  NA  G L AR+R F+KP+
Sbjct: 777 PFTSQKITLKQTKQADMRLLNKLKIKLNALLGSLRARYRKFKKPL 821


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 27  GLFSSVS-ASLIPTFTDWKIIENGFREQWNFP 57
           G+F ++S AS++P  +D+     G R +W  P
Sbjct: 102 GIFKTISKASMLPAKSDYSYFLKGIRPEWEDP 133


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 55  NFPGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIV 90
           NFP    ++   H  I  PP +GS      +TN I+
Sbjct: 135 NFPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHII 170


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 123 LYEELENGVLPEGHVLV--GDNAFPLKEYLLKPFPGNRLTLQQKIFNYRLSRARRIVENA 180
           L+E+ EN V  +  VL    DN F L        P     L++   NY  S ++   E+ 
Sbjct: 657 LFEDFENNVSIDEKVLKEEADNPFIL--------PNEESLLEKYWINYNESFSQLSRESL 708

Query: 181 FGILAARFRVFEKPMRYSPEKVVK 204
           F  L + F   E P   S  K+V+
Sbjct: 709 FTSLESPFTDIESPTIVSRRKIVE 732


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 184 LAARFRVFEKPMRYSPEKVVKIVKTCCALHNWLRQTKLQNRQ 225
           +A ++ V  +   ++  + +K  K C  +H W    +LQ R+
Sbjct: 532 VAVQWMVDARDHMWNVSRAIKNAKRCIMIHGWWLSPELQMRR 573


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,034
Number of Sequences: 5004
Number of extensions: 56170
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 5
length of query: 294
length of database: 2,362,478
effective HSP length: 72
effective length of query: 222
effective length of database: 2,002,190
effective search space: 444486180
effective search space used: 444486180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)