GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001263-TA|BGIBMGA001263-PA|IPR002559|Transposase, IS4
         (294 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036925-1|AAH36925.1|  349|Homo sapiens chromosome 11 open read...    81   6e-15
AK057237-1|BAB71391.1|  349|Homo sapiens protein ( Homo sapiens ...    81   6e-15

>BC036925-1|AAH36925.1|  349|Homo sapiens chromosome 11 open reading
           frame 77 protein.
          Length = 349

 Score = 80.6 bits (190), Expect = 6e-15
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 57  PGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYIDVGCNGRVSDGG 116
           PG  G +D  HV IKAP      Y N K  +S+  + V D +     ++    G + D  
Sbjct: 142 PGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCA 201

Query: 117 VFRNCSLYEELENGVLPEGHVLVGDNAFPLKEYLLKPFPGNRLTLQQKIFNYRLSRARRI 176
           V +  SL  + E G+  +   L+GD++F L+ +L+ P        + + +N   S    +
Sbjct: 202 VLQQSSLSSQFEAGMHKDSW-LLGDSSFFLRTWLMTPLHIPETPAEYR-YNMAHSATHSV 259

Query: 177 VENAFGILAARFRVFE---KPMRYSPEKVVKIVKTCCALHN 214
           +E  F  L +RFR  +     ++YSPEK   I+  CC LHN
Sbjct: 260 IEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHN 300


>AK057237-1|BAB71391.1|  349|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32675 fis, clone TESTI1000163. ).
          Length = 349

 Score = 80.6 bits (190), Expect = 6e-15
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 57  PGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYIDVGCNGRVSDGG 116
           PG  G +D  HV IKAP      Y N K  +S+  + V D +     ++    G + D  
Sbjct: 142 PGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCA 201

Query: 117 VFRNCSLYEELENGVLPEGHVLVGDNAFPLKEYLLKPFPGNRLTLQQKIFNYRLSRARRI 176
           V +  SL  + E G+  +   L+GD++F L+ +L+ P        + + +N   S    +
Sbjct: 202 VLQQSSLSSQFEAGMHKDSW-LLGDSSFFLRTWLMTPLHIPETPAEYR-YNMAHSATHSV 259

Query: 177 VENAFGILAARFRVFE---KPMRYSPEKVVKIVKTCCALHN 214
           +E  F  L +RFR  +     ++YSPEK   I+  CC LHN
Sbjct: 260 IEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHN 300


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,449,827
Number of Sequences: 224733
Number of extensions: 1793890
Number of successful extensions: 2835
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2829
Number of HSP's gapped (non-prelim): 2
length of query: 294
length of database: 73,234,838
effective HSP length: 89
effective length of query: 205
effective length of database: 53,233,601
effective search space: 10912888205
effective search space used: 10912888205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)