GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001263-TA|BGIBMGA001263-PA|IPR002559|Transposase, IS4
         (294 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012484-1|AAS93755.1|  409|Drosophila melanogaster LP08122p pro...    50   4e-06
AE014296-2964|AAF49302.2|  409|Drosophila melanogaster CG32187-P...    50   4e-06
BT004900-1|AAO47878.1|  573|Drosophila melanogaster LD12639p pro...    40   0.005
AE014296-1300|AAF50529.1|  573|Drosophila melanogaster CG7492-PA...    40   0.005
AE014134-3385|AAN11116.1|  381|Drosophila melanogaster CG31622-P...    29   5.8  

>BT012484-1|AAS93755.1|  409|Drosophila melanogaster LP08122p
           protein.
          Length = 409

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 132 LPEGHVLVGDNAFPLKEYLLKPFPGNRLTLQQKIFNYRLSRARRIVENAFGILAARFRVF 191
           +P G  L+G++ FPLK YL++P        +  +FN  L  A  + E     LA RF   
Sbjct: 274 MPAGSYLIGNDVFPLKSYLMRPIEAECFR-KDAMFNEMLRPAFELAEQVLDTLARRFNTL 332

Query: 192 EKPMRYSPEKVVKIVKTCCALHN 214
                    +V  IV++ CA+HN
Sbjct: 333 YALEARDLNEVRLIVESICAMHN 355


>AE014296-2964|AAF49302.2|  409|Drosophila melanogaster CG32187-PA
           protein.
          Length = 409

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 132 LPEGHVLVGDNAFPLKEYLLKPFPGNRLTLQQKIFNYRLSRARRIVENAFGILAARFRVF 191
           +P G  L+G++ FPLK YL++P        +  +FN  L  A  + E     LA RF   
Sbjct: 274 MPAGSYLIGNDVFPLKSYLMRPIEAECFR-KDAMFNEMLRPAFELAEQVLDTLARRFNTL 332

Query: 192 EKPMRYSPEKVVKIVKTCCALHN 214
                    +V  IV++ CA+HN
Sbjct: 333 YALEARDLNEVRLIVESICAMHN 355


>BT004900-1|AAO47878.1|  573|Drosophila melanogaster LD12639p
           protein.
          Length = 573

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 134 EGHVLVGDNAFPLKEYLL--KPFPGNRLTLQQ-KIFNYRLSRARRIVENAFGILAARFRV 190
           +G+   GD+  P   YL+  +  P +   L+  +  N    +  RI+ N F ILA     
Sbjct: 367 QGYYFAGDSVLPATSYLVTTRNLPKDLAVLEALEQVNAHADQTMRILCNMFPILA----- 421

Query: 191 FEKPMRYSPEKVVKIVKTCCALHNWLRQT 219
             +P+R S + + ++V  C AL+N+LR+T
Sbjct: 422 --QPLRISDKHIREVVLGCVALYNFLRKT 448


>AE014296-1300|AAF50529.1|  573|Drosophila melanogaster CG7492-PA
           protein.
          Length = 573

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 134 EGHVLVGDNAFPLKEYLL--KPFPGNRLTLQQ-KIFNYRLSRARRIVENAFGILAARFRV 190
           +G+   GD+  P   YL+  +  P +   L+  +  N    +  RI+ N F ILA     
Sbjct: 367 QGYYFAGDSVLPATSYLVTTRNLPKDLAVLEALEQVNAHADQTMRILCNMFPILA----- 421

Query: 191 FEKPMRYSPEKVVKIVKTCCALHNWLRQT 219
             +P+R S + + ++V  C AL+N+LR+T
Sbjct: 422 --QPLRISDKHIREVVLGCVALYNFLRKT 448


>AE014134-3385|AAN11116.1|  381|Drosophila melanogaster CG31622-PD,
           isoform D protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  IKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYI 104
           IK+  ES   YYN+ + N ++ ++  +  +CF  +
Sbjct: 204 IKSSKESREFYYNFCKYNQVIWLSYTEINHCFGLL 238


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,153,953
Number of Sequences: 52641
Number of extensions: 600446
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 5
length of query: 294
length of database: 24,830,863
effective HSP length: 84
effective length of query: 210
effective length of database: 20,409,019
effective search space: 4285893990
effective search space used: 4285893990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)