Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001263-TA|BGIBMGA001263-PA|IPR002559|Transposase, IS4
(294 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81554-5|CAB04511.1| 231|Caenorhabditis elegans Hypothetical pr... 120 9e-28
AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical... 92 4e-19
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical... 31 1.3
AF078787-10|AAC26956.1| 352|Caenorhabditis elegans Hypothetical... 29 3.0
Z83236-6|CAB05784.1| 315|Caenorhabditis elegans Hypothetical pr... 29 5.2
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 28 6.9
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 28 6.9
AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z81554-5|CAB04511.1| 231|Caenorhabditis elegans Hypothetical
protein F57G4.9 protein.
Length = 231
Score = 120 bits (290), Expect = 9e-28
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query: 42 DWKIIENGFREQWNFPGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCF 101
+W+ +E F ++ + C G++DGKH+ IKAPP SGSL++NYK S VL+ VVD
Sbjct: 12 EWRKVERTFAKK-HILRCLGSLDGKHIRIKAPPHSGSLFFNYKHFFSFVLLVVVDADGRV 70
Query: 102 SYIDVGCNGRVSDGGVFRNCSLYEEL-ENGVLPE----------GHVLVGDNAFPLKEYL 150
++DVG G +D +F + L L E LP ++ D F + +
Sbjct: 71 IWVDVGSPGSNNDASIFSDSKLKTILDEEANLPPPTFWSRDFVVKPFVIADGIFKITPRM 130
Query: 151 LKPFPGNRLTLQQKIFNYRLSRARRIVENAFGILAARFRVFEKPMRYSPEKVVKIVKTCC 210
+ + GN L + QK+ N +LSRAR E+AFG L+A+FR+ + M EK V I+ C
Sbjct: 131 MTLYGGNGLNISQKVLNKKLSRARVKAEHAFGRLSAKFRILRREMECPYEKSVDIILALC 190
Query: 211 ALHNWL 216
LHN+L
Sbjct: 191 HLHNYL 196
>AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical
protein F14D2.9 protein.
Length = 658
Score = 92.3 bits (219), Expect = 4e-19
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 47 ENGFREQWNFPGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYIDV 106
E+ E+ P C G +DGKH + PP+SG+L YNYK S + V D Y ++ +
Sbjct: 438 EDSNGEERRMP-CYGIVDGKHWRCEHPPKSGALNYNYKGFFSFNSLIVSDSDYRILFVQM 496
Query: 107 GCNGRVSDGGVFRNCS----LYEELEN---GVLPEGHVL-----VGDNAFPLKEYLLKPF 154
NG SD +++N L + +EN LP+ +VL + DN F L + +++P+
Sbjct: 497 CKNGLNSDAQLYQNGPLPRLLTKAIENVGYRTLPDPNVLMPPFILADNGFGLHKSMMQPY 556
Query: 155 PGNRLTL--QQKI-FNYRLSRARRIVENAFGILAARFRVFEKPMRYSPEKVVKIVKTCCA 211
++ L ++ I FN++LS R VEN FG+L ++F +F++ +R P+ ++ C
Sbjct: 557 RPTQIGLNPEENISFNFKLSGTRVKVENVFGVLTSKFHIFQQNLRLEPKTSQALIIAVCV 616
Query: 212 LHN 214
+HN
Sbjct: 617 VHN 619
>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
protein Y71G12B.5 protein.
Length = 1098
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 46 IENGFREQWNFPGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYID 105
I N F +++NF GC + + V +GS + + T+S + + +Y
Sbjct: 649 IANFFNQEFNFHGCKSSYNKYDTVEMLSRYAGSA-FEMRVTSSRFVDYNAEIEYTVIVQG 707
Query: 106 VGCNGRVSDGGVFRNCSLYEELENGVLPEGHV----LVGDNAFPLKEYLLK 152
G N ++D + RN + L +GV+ L GD++ EY++K
Sbjct: 708 FGVNKIMADFHLTRNIGSFWRLSSGVMTNCEAPRTFLSGDSSRIAGEYMIK 758
>AF078787-10|AAC26956.1| 352|Caenorhabditis elegans Hypothetical
protein T17A3.10 protein.
Length = 352
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 50 FREQWNFPGCCGAIDGKHVVIKAPPESGSLYYNYKETNSIVLMAVVDHKYCFSYIDVGCN 109
F + + +PG I+ + I PPE+ L Y K+T S V + Y + D G
Sbjct: 37 FEQDFYYPGTRLHIECLSISI--PPETAFLEYRTKKTGSFVRI-----NYQRAISDDG-- 87
Query: 110 GRVSDGGVFRNCSLYEELE 128
D GVF N SL E++E
Sbjct: 88 --TFDSGVFYNVSLTEDIE 104
>Z83236-6|CAB05784.1| 315|Caenorhabditis elegans Hypothetical
protein K10H10.6 protein.
Length = 315
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 147 KEYLLKPFPGNRLTLQQKIFNYRLSRARRIVENAFGI-LAARFRVFEKPMRYSPEKVVKI 205
+EYL K +P + L L +F +++ + +E+ FG+ + A F V + +P ++V +
Sbjct: 98 EEYLKKKWPIHGLILNAGVFQPAVAKTKDGLESHFGVNVLAHFTVMVR--LSAPSRIVIL 155
Query: 206 VKTCCALHNW 215
T + H +
Sbjct: 156 SSTLSSRHGF 165
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 189 RVFEKP--MRYSPEKVVKIVKTCCALHNWLRQT------KLQNRQYEYTVDSEHFEAGTS 240
++++KP + SPEK V I + Q+ K + + +VD E TS
Sbjct: 1584 KIWKKPKIVNKSPEKEVNISANVTLRRSRRGQSTEPPVVKENSNRKRKSVDEEEENVPTS 1643
Query: 241 VPGNWRNEPQSLGMQPI 257
GN N+P S G+ P+
Sbjct: 1644 SSGNTENDPLSRGVTPL 1660
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 189 RVFEKP--MRYSPEKVVKIVKTCCALHNWLRQT------KLQNRQYEYTVDSEHFEAGTS 240
++++KP + SPEK V I + Q+ K + + +VD E TS
Sbjct: 1584 KIWKKPKIVNKSPEKEVNISANVTLRRSRRGQSTEPPVVKENSNRKRKSVDEEEENVPTS 1643
Query: 241 VPGNWRNEPQSLGMQPI 257
GN N+P S G+ P+
Sbjct: 1644 SSGNTENDPLSRGVTPL 1660
>AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical
protein Y48G8AR.2 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 190 VFEKPMRY--SPEKVVKIVKTCCALHNWLRQTKLQNRQYEYTV-DSEHFEAGTSVPGN 244
V EK + + S + ++ + TC A+ ++T LQ ++ +V SE E+G S PGN
Sbjct: 27 VLEKDLEFQQSEQNRIRSLSTCVAI----KKTSLQEKRRASSVAGSESSESGLSSPGN 80
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,225,242
Number of Sequences: 27539
Number of extensions: 306159
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 10
length of query: 294
length of database: 12,573,161
effective HSP length: 81
effective length of query: 213
effective length of database: 10,342,502
effective search space: 2202952926
effective search space used: 2202952926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -