Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
         (245 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   6.6  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   6.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.6  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    21   8.7  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   8.7  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   8.7  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 229 EDGNVDTLINWSSSGI 244
           EDG+V  L +W  +G+
Sbjct: 63  EDGSVSVLDDWEMTGL 78


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 229 EDGNVDTLINWSSSGI 244
           EDG+V  L +W  +G+
Sbjct: 63  EDGSVSVLDDWEMTGL 78


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
          protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 41 HVQSHVSEHSTAIESNKELPK 61
          H  SH+  HS    +N E P+
Sbjct: 51 HHHSHMPPHSVFAANNAEFPE 71


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
          protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 41 HVQSHVSEHSTAIESNKELPK 61
          H  SH+  HS    +N E P+
Sbjct: 51 HHHSHMPPHSVFAANNAEFPE 71


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory
          receptor candidate 30 protein.
          Length = 394

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 34 VEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPS 67
          V+ ++TP  +S +S   TA   NK L K  +  S
Sbjct: 3  VQPSNTPPEKSQLSTADTANLINKSLGKHNLQKS 36


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory
          receptor candidate 29 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 34 VEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPS 67
          V+ ++TP  +S +S   TA   NK L K  +  S
Sbjct: 3  VQPSNTPPEKSQLSTADTANLINKSLGKHNLQKS 36


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory
          receptor candidate 7 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 34 VEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPS 67
          V+ ++TP  +S +S   TA   NK L K  +  S
Sbjct: 3  VQPSNTPPEKSQLSTADTANLINKSLGKHNLQKS 36


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,526
Number of Sequences: 317
Number of extensions: 1711
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 245
length of database: 114,650
effective HSP length: 55
effective length of query: 190
effective length of database: 97,215
effective search space: 18470850
effective search space used: 18470850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)