GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
         (245 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    32   0.37 
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    31   0.65 
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690...    31   0.65 
04_04_0128 + 22961285-22961386,22962176-22962748                       30   1.5  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   2.6  
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    29   3.5  
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    29   3.5  
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    29   4.6  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    28   6.1  

>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 43  QSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLT 91
           Q  V  HS   ES    P  + APST+    ISPI+S+  + +G  NLT
Sbjct: 727 QQLVRSHSALAESGD--PSSSTAPSTSR---ISPINSLSRANQGSRNLT 770


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 33  AVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTE 85
           A +DNS  H  S V+    AIE  KE+  +  A + NA DP+ P+   H   E
Sbjct: 725 AEKDNSVLH--SEVNTSGGAIEPEKEVQTDDTAIAANAIDPV-PVEQPHLGQE 774


>03_06_0517 +
           34466743-34466879,34468478-34468588,34468997-34469079,
           34469287-34469404,34469503-34469714,34470167-34470651,
           34470731-34470801,34470898-34470955,34471161-34471192,
           34471193-34471449,34471820-34471974,34472353-34472636,
           34472725-34472842,34473574-34473756,34473848-34474162
          Length = 872

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 32  KAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPIS---PIHSVHNSTEGKS 88
           KA  + S P++Q     + ++ ES      ++     ++    S   P+ S  NST G+ 
Sbjct: 195 KAASEESHPNIQDKPVVNESSKESQSRSTNDSTTRGVDSMKHASKEEPVESKPNSTRGQE 254

Query: 89  NLTILDN 95
           N+ +L+N
Sbjct: 255 NMDVLNN 261


>04_04_0128 + 22961285-22961386,22962176-22962748
          Length = 224

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 51  TAIESNKELPK---EAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNSTVRKEIDFNSP 107
           T  E NKE+     E+ +PS     P  P    + S +G+  LT  D+S   K +D +S 
Sbjct: 28  TIAELNKEMESVFGESPSPSPLGSTPQQPARPTNGSGDGQPMLTHTDSSGQAKMVDVSSK 87

Query: 108 GVVKRGAI 115
               R AI
Sbjct: 88  HDSTRVAI 95


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 30  NGKAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISP 76
           NGK V  N +P   ++VS ++  IE+N++    AV  S  AK+  SP
Sbjct: 209 NGKPVLFNGSPTANANVSPNNGVIENNQK-AVAAVLTSVPAKNVSSP 254


>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 43  QSHVSEHSTAIESNKELPKEAVAPSTNAKDPIS--PIHSVHNSTEGKSNLTILDNST--- 97
           Q H   H   +   + L   ++   +N K  +   PI  V NST      T++DN +   
Sbjct: 780 QKHQLYHHMDMFLGELLGAVSLVEGSNIKQSLQRKPISIVANSTTSIDGQTVVDNQSANL 839

Query: 98  VRKEIDFNSPGVVKRGAIVFG 118
           V+  +DFNS    KR A   G
Sbjct: 840 VKVLLDFNSEEYYKRVANSLG 860


>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 46  VSEHSTAIESNK-ELPKEAVAPSTNAKDPISPIHSV 80
           VS++S  ++S+   LP+  + P +N  +PI P+++V
Sbjct: 431 VSQYSAMVDSDACPLPQHVLGPYSNLLEPIHPLYNV 466


>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 195 KSLSYVNLQLNDEDVVLGSAENKYDDRDNLLLDIEDGNVDTLI 237
           K    +  QL ++++ LG A+   DD   L+ +++DGN D ++
Sbjct: 395 KKAKILERQLEEQEI-LGEADESDDDLAALIRNMDDGNQDDIL 436


>05_01_0334 -
           2642998-2643063,2643125-2643169,2643552-2643617,
           2643625-2643730,2643770-2644349,2645780-2645871,
           2645969-2646035,2646126-2646231,2646628-2646708,
           2646789-2647058,2647158-2648788,2648834-2649385,
           2650602-2651324,2651451-2651526
          Length = 1486

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 41  HVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNSTVRK 100
           H  SHV + S +  SN ++    +   + + + +SPI S  N +  KS+   L   +V +
Sbjct: 891 HKGSHVEDASKSPRSNSDIHSSVLKTPSKSANELSPIFSPLNPS--KSSSRSLSKPSVGR 948

Query: 101 EI 102
           E+
Sbjct: 949 EL 950


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,045,524
Number of Sequences: 37544
Number of extensions: 215613
Number of successful extensions: 398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 9
length of query: 245
length of database: 14,793,348
effective HSP length: 80
effective length of query: 165
effective length of database: 11,789,828
effective search space: 1945321620
effective search space used: 1945321620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)