Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
(245 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079) 32 0.50
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3) 29 2.7
SB_31557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 29 3.5
SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 29 4.7
SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2) 29 4.7
SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44) 28 6.2
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 28 8.2
SB_5630| Best HMM Match : EB1_binding (HMM E-Value=1.8) 28 8.2
>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 31 GKAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNL 90
GK+ DN +S S+++ + KE +AV PS++ K P++ + STE SNL
Sbjct: 511 GKSASDNEKDLSRSAKSKNTKSKSKKKE--DDAVKPSSSPKSPVNKSSANKGSTE--SNL 566
Query: 91 TIL---DNSTVRKEIDFNSPGVVKR 112
+ D VRK+++ +K+
Sbjct: 567 VMKNTDDEKEVRKQVNGTPSQEIKK 591
>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
Length = 502
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 38 STPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNST 97
S+P H+ + ++ E+ E K ++ T K I+ + S +S+ NL+ +DN +
Sbjct: 174 SSPRCHEHIPNYPSSSEAEDEEKKNSLGRKTTKK--ITNLFSFSSSSSSNQNLSTIDNYS 231
Query: 98 VRKEID---FNSPGVVKRGAIVFGGF 120
K +R + FGGF
Sbjct: 232 CEKAPTPERKRRQSFSRRSPLNFGGF 257
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 41 HVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNSTVRK 100
H H +S+ E+P T A P+SP+H H+ +G RK
Sbjct: 851 HHHHHFKNTGRRSKSSPEIPVSPTVLGTTASAPVSPVH--HHHYDGLPGERSRRKKKARK 908
Query: 101 EIDFNSPGVVKRGAIVF 117
+D + V + G + +
Sbjct: 909 SVDDSYCNVSEHGDLEY 925
>SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)
Length = 349
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 38 STPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTE 85
+TPHV + ST ++ + ST+ KD I + S+ S E
Sbjct: 271 ATPHVNRRSKDASTRARHSENASERGHCTSTDRKDDIDGLQSIRRSLE 318
>SB_31557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 37 NSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILDNS 96
N + H+ + S+H T +S P ++ + N I+P S H + ++T+ D+
Sbjct: 159 NDSQHITLNDSQHITLNDSQHITPNDSQHITLNDSQHITPNDSQHITLNNSQHITLNDSQ 218
Query: 97 TV 98
V
Sbjct: 219 HV 220
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 31 GKAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEG-KSN 89
G V T + + VS ST LP+ VAP I+ ++E S
Sbjct: 181 GTTVASGGTDALVTTVSPESTLTPGTTVLPESTVAPGIAVASEITVTRGTTVASESTDSE 240
Query: 90 LTILDNSTVRKEIDFNSPG 108
TI+ +TV +E F +PG
Sbjct: 241 STIVPVTTVARESTF-TPG 258
>SB_57393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 83 STEGKSNLTILDNST-VRKEIDFNSPGV-VKRGA----IVFGGFALLAVAYFIFYRSKHK 136
+ E + + +++ NST +E F G+ VK ++FGGFA++A +I+ R K K
Sbjct: 148 AVEDRPDYSVMYNSTNTSREYVFTPAGLPVKMSLTVIQVLFGGFAVVANGTYIYLRRKMK 207
Query: 137 SNEANTMHSSI 147
+ S+
Sbjct: 208 RKSRHVFSRSM 218
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 31 GKAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPST-NAKD-PISPIHSVHNSTEGKS 88
G+ + D + P + E A E+N + P+E VAPS + KD + P+ + GKS
Sbjct: 451 GEDLLDTTEPEEPAWKREAREAREANYKKPEEKVAPSVQHLKDKKVLPVLRPEDILSGKS 510
Query: 89 NL 90
L
Sbjct: 511 EL 512
>SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)
Length = 181
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 204 LNDEDVVLGSAENKYDDRDNLLLDIED 230
L D+D +L EN D+DN+L D +D
Sbjct: 13 LQDKDDILKDKENALPDKDNILKDKDD 39
>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
Length = 587
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 39 TPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISP 76
T VQS ++H+++ +S+ P + +PS ++KD +SP
Sbjct: 337 TAEVQSLKADHASSRQSHSLPPSDVASPSRSSKD-VSP 373
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 45 HVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLTILD-NSTVRKEID 103
HV+ STA+ + K ++ T + H H ST KS I ST+ K+ +
Sbjct: 3021 HVTAESTAVTQEHDTDKSRISAPTILRGITGVAH--HQSTADKSTRNIAGLGSTLSKKEN 3078
Query: 104 FN 105
FN
Sbjct: 3079 FN 3080
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 88 SNLTILDNSTVRKEIDFNSPGVVKRGAIVFGGFALLAVAYFIFYRS 133
SNL + N T++ ID ++ G IVFGG ++ + + YRS
Sbjct: 5423 SNLARMKN-TIKSIIDRYGSTSIRYGVIVFGGVPVIKMGFEKEYRS 5467
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 37 NSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKS 88
NS H +SH +H+ +S ++ A T+ P N T+G S
Sbjct: 571 NSPQHHESHPPDHTQGADSGEKTSSGAEKTGTSTSQESQP-EKAENQTQGNS 621
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 75 SPIHSVHNSTEGKSNLTILDNSTVRKEIDFNS-PGV 109
SP+H V +T G L +T + DFNS PGV
Sbjct: 341 SPVHGVRCTTNGYYQLVDNHGNTYKAYCDFNSEPGV 376
>SB_5630| Best HMM Match : EB1_binding (HMM E-Value=1.8)
Length = 310
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 35 EDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPI---SPIHSVHNSTEGKSN 89
E+ +T + VS +ST ESN+EL EA+ ST + S + NST +SN
Sbjct: 39 EELTTKAITGSVS-NSTRQESNEELTTEAITGSTRKQQGAYYRSDYRILSNSTRRESN 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.128 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,098,481
Number of Sequences: 59808
Number of extensions: 267013
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 23
length of query: 245
length of database: 16,821,457
effective HSP length: 80
effective length of query: 165
effective length of database: 12,036,817
effective search space: 1986074805
effective search space used: 1986074805
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -