GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
         (245 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    26   0.88 
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      24   4.7  

>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 32  KAVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSNLT 91
           K+++ ++TP  + H+    T +     +P      + +A  P      ++N++ G++N T
Sbjct: 7   KSLQLSTTP--EYHIP---TXVLDPLRVPNHTTVVAPSAVSPHQSSFMINNNSTGRTNFT 61

Query: 92  ILDNSTVRKEIDFN 105
               + + KE  FN
Sbjct: 62  NKQLTELEKEFHFN 75


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 118 GGFALLAVAYFIFYRSKHKSNEANTMHS 145
           GG  +L  A+F  YR + K   A  M+S
Sbjct: 195 GGLVVLLGAFFWVYRRREKRKPAYLMNS 222


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,501
Number of Sequences: 2123
Number of extensions: 6856
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 245
length of database: 516,269
effective HSP length: 62
effective length of query: 183
effective length of database: 384,643
effective search space: 70389669
effective search space used: 70389669
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)