GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001262-TA|BGIBMGA001262-PA|IPR002048|Calcium-binding
EF-hand
         (245 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-6|AAB65283.2|  313|Caenorhabditis elegans Hypothetical ...    32   0.44 
Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U58728-1|AAB00588.1|  430|Caenorhabditis elegans Temporarily ass...    28   7.1  

>AF016417-6|AAB65283.2|  313|Caenorhabditis elegans Hypothetical
           protein F17A9.6 protein.
          Length = 313

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 13/77 (16%)

Query: 33  AVEDNSTPHVQSHVSEHSTAIESNKELPKEAVAPSTNAKDPISPIHSVHNSTEGKSN--- 89
           A ++N+T  VQ+  S+   A       P +  AP    ++ +SP  S  NS + K +   
Sbjct: 86  AKKENNTQVVQTQPSQTRAA-------PYQKRAPLKQRQEAVSPSSS--NSEQSKYSKQE 136

Query: 90  -LTILDNSTVRKEIDFN 105
            L +LDN T+ KEIDF+
Sbjct: 137 ALAMLDNPTIIKEIDFD 153


>Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical
           protein F32B4.2 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 115 IVFGGFALLAVAYFIFYRSKHKSNEANTMHSS 146
           +V GG ALLA+A + ++  K KS++ ++  SS
Sbjct: 14  VVVGGAALLAIAAYYYWSQKKKSSDTSSATSS 45


>U58728-1|AAB00588.1|  430|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 294 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 36  DNSTPHVQSHVSEHSTAIESNKELPKEAVAP 66
           + S PH++S+V+      E+ K  P++++ P
Sbjct: 187 EESVPHIESNVNTELVKEENKKPTPEDSIGP 217


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,339,308
Number of Sequences: 27539
Number of extensions: 201601
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 3
length of query: 245
length of database: 12,573,161
effective HSP length: 79
effective length of query: 166
effective length of database: 10,397,580
effective search space: 1725998280
effective search space used: 1725998280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)